Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2332 ATGTGTAGGAACCAATTTTCAAGCCGTGGCTTTTGGACATGTCAAAGGTCACTGCTTGAAGAGTTCAAGTCTGAAGTTGAACCAATGGAAATTACACCTGCTAGAAAGACACAGAAGGCTGATCGAGAAAAGTTAAGGAGGGATAGACTCAATGAACAGTTTTTAGAGCTGGGTAACATTTTAGACCCTGATAGGCCTAAAAATGATAAAGCAACTATTCTAGGAGATACAGTTCAATTGCTGAAGGACCTTTCTTCTCAAGTTAGTAAACTAAAAGATGAATATACTATGCTAAATGAAGAATCTCGTGAGTTGTCTCAGGAGAAAAATGATCTCAGAGAAGAAAAGGCTTCTCTTAAATCAGATATTGAGAATTTGAATAACCAGTATCAGCTGCAACTAAGGACTATGTATCCATGGCCTGCAATGGATCATTCTGTTATGATGGCTCCACCATCATATCCGTATCCAGTTCCAATGCCAGTACCTGCTGGTTCAATTCCCATGCAGCCATACCCCTACTATGCTAATCAACATCCTGCAGTCATCCCTAACCCTTGTTCAACATACGTTCCCTTTTTAGCCCCGAATACAATTGTTGAACAACAATCCACTCAGTACGTATCCCCGCCTCTTCATCCAGGTAGCCGGTCCCACGTATCAGGAAAACAAGACTCCAAAAACAAATCATCCAGGGAGAGTAAGGCTCAAAGAAATGAGGATTCTAATGATGTAGCCACGGACCTTGAGTTGAAGACTCCTGGGTCGTCCGCAGATCAGGATTTAACATCCGCACAGAAAAAATCTAGTAAGTCGTCAAGGAAGGAAACCAGTTTCACAGAAGGTAGTTCGTTAGGCAAGTGTTCTTCATCTCACAGTGTTCAGGATAGCTCATCAAGTAGTGTAGTGGGGAGCAGAAAGGCTAGTGAATGA 933 0.4212 MCRNQFSSRGFWTCQRSLLEEFKSEVEPMEITPARKTQKADREKLRRDRLNEQFLELGNILDPDRPKNDKATILGDTVQLLKDLSSQVSKLKDEYTMLNEESRELSQEKNDLREEKASLKSDIENLNNQYQLQLRTMYPWPAMDHSVMMAPPSYPYPVPMPVPAGSIPMQPYPYYANQHPAVIPNPCSTYVPFLAPNTIVEQQSTQYVSPPLHPGSRSHVSGKQDSKNKSSRESKAQRNEDSNDVATDLELKTPGSSADQDLTSAQKKSSKSSRKETSFTEGSSLGKCSSSHSVQDSSSSSVVGSRKASE* 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2332 310 Coils Coil 81 136 - -
Mtr4g2332 310 Pfam Helix-loop-helix DNA-binding domain 35 84 IPR011598 GO:0046983
Mtr4g2332 310 PANTHER TRANSCRIPTION FACTOR BHLH121 15 308 - -
Mtr4g2332 310 MobiDBLite consensus disorder prediction 249 267 - -
Mtr4g2332 310 Gene3D - 34 117 IPR036638 GO:0046983
Mtr4g2332 310 MobiDBLite consensus disorder prediction 220 247 - -
Mtr4g2332 310 SMART finulus 40 90 IPR011598 GO:0046983
Mtr4g2332 310 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 33 104 IPR036638 GO:0046983
Mtr4g2332 310 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 34 84 IPR011598 GO:0046983
Mtr4g2332 310 MobiDBLite consensus disorder prediction 276 310 - -
Mtr4g2332 310 CDD bHLH_AtILR3_like 39 113 - -
Mtr4g2332 310 PANTHER TRANSCRIPTION FACTOR BHLH121 15 308 IPR044579 GO:0003700|GO:0055072
Mtr4g2332 310 MobiDBLite consensus disorder prediction 205 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2332 Mtr-Chr4 36816685 36819285 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g2332 17 274 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G19860 60.606 1.01e-96 286
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mtr4g2332 HLH 4.9e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2332 - - cam:101491902 476.863
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g2332 4 36816685 36819285 Mtr4g2332 4 36816685 36819285 ECH