LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mtr4g2311	ATGGAACAACACTTTTATGTTTTGAGTGAATCTGACATAAAGCGCCTTCAAGATGCTGACATCAATCATCTTTCATCAATTCTCTTTGTATCAAGACCAGTTGCATGTCTTTTACTCTCCCATTACAATTGGAATGTCACTCAAGCTTCAGAATCATGGTTTGATAACCAACAAAAAGTTCGAAATGCCATAGGCTTATCGAACGAAACCCACATAGAATTAGGGCTTGCCTACTCATCACATACTCTCATTTGTGGTATTTGCTTAGAAATCTTTTCTAGCGAAGCGATTAGATCATCATGGTGTCGTCATTCATTTTGCATCAATTGCTGGAATCAATACGTTGATACCCATATCGATGATCATAACTGCTTCAAACTCAAATGCCCTGAGCCTTCTTGTAATGCAGCTGTAGATGAAGACATGATTCAACAATTAGCAAGTGAGTCAAGAAAGATTAAATACGATCAATTTTTCTTTCGTTCTTATGTTGAAAACAACAATAACATGAAATTGAAGTGGTGTCCTGCTCCAGATTGTTGTAATGCTATAAGTTATGAATTACCATATCATCACGGTTCAAGTAGTTCTAGAATAAATTATGATGTTACATGTCTTTGTTATCATAGCTTTTGTTGGAATTGTGGTGAAGAAGCTCACACACCTGTTGATTGTGAAATTGTTGCTAAATGGATGAAGAAGACGAGTTCTGAATTTAAGATCACTACTAATGGCTGGATTATTGCTAACACAAAAAGATGCCCTAAATGTAAGACACCAATTGAGAAAAACAATGGATGTAATCATATGTCATGCAAATGTGGGATCCAATTTTGCTGGCTATGTCTCCGCGATTTCTCTAATTGTCGTGATGGTGTCAATTGCGCGCAAGTTCAGGAATTTCAAGAGTTATTTGGAGATGAAATGCAAAGAAACCATGCAAAAAATCATTTGGATAGGTACACTTACTACCATCAAGGTTGGGCAAACAATGAAATTTCAAGAAAAAAGTCTGGAACTAATTTCGGTAATTTCATGGTAAAGGATGCATTGAAACACATAGTTGAATGCAGAAGAATTCTCAGATGGAGTTATGTATATGGATACTATCTTCCCGAGGATGAAAATGCTAAGATTGAGTTTTTTGATCACATCCAAAGCATAGCTCAAGTTGTTTTGGATAGGCTTCATCATTTTGCAGAAAATGGATTAAGAAAGCAACTTCTACATAATGGGTCCGAGGAAGAATTTTGTGATTTTCGGACGAAGCTAACCACTAGGGCTCGGGTGGCTAAAAGTTATGGCATTCTCGTGGCAATTGTTGCTTCGACGTCTTCCTACAAGAAGGAATTTGGTCAATTTGGGAATGGGGGTGGAATTGTCGTGCATGTGAATTGTGATGAAGAAGCTCATACACCTGTGGATTGTGAAACTGTTGCTAAATGGATGAAAAATATTAGTTCCGAATTTAAGATCACTACTAGTGGTTGGATTGTTGCCAACACAAAACCATGTCCTGAATCATATGACATGCAAATGTGGGTTCCAATTTTGCTGGTTATGTCTCCACTCTCCGTGTATTTGCAACGGTTCCAATCGCTTACAACAAGTTCAGGAATTTCAAGAGATATTTGGAAATGA	1641	0.3723	MEQHFYVLSESDIKRLQDADINHLSSILFVSRPVACLLLSHYNWNVTQASESWFDNQQKVRNAIGLSNETHIELGLAYSSHTLICGICLEIFSSEAIRSSWCRHSFCINCWNQYVDTHIDDHNCFKLKCPEPSCNAAVDEDMIQQLASESRKIKYDQFFFRSYVENNNNMKLKWCPAPDCCNAISYELPYHHGSSSSRINYDVTCLCYHSFCWNCGEEAHTPVDCEIVAKWMKKTSSEFKITTNGWIIANTKRCPKCKTPIEKNNGCNHMSCKCGIQFCWLCLRDFSNCRDGVNCAQVQEFQELFGDEMQRNHAKNHLDRYTYYHQGWANNEISRKKSGTNFGNFMVKDALKHIVECRRILRWSYVYGYYLPEDENAKIEFFDHIQSIAQVVLDRLHHFAENGLRKQLLHNGSEEEFCDFRTKLTTRARVAKSYGILVAIVASTSSYKKEFGQFGNGGGIVVHVNCDEEAHTPVDCETVAKWMKNISSEFKITTSGWIVANTKPCPESYDMQMWVPILLVMSPLSVYLQRFQSLTTSSGISRDIWK*	547

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mtr4g2311	546	ProSiteProfiles	Zinc finger RING-type profile.	85	130	IPR001841	-
	Mtr4g2311	546	SUPERFAMILY	RING/U-box	80	166	-	-
	Mtr4g2311	546	SUPERFAMILY	RING/U-box	242	300	-	-
	Mtr4g2311	546	Pfam	IBR domain, a half RING-finger domain	154	225	IPR002867	-
	Mtr4g2311	546	Pfam	IBR domain, a half RING-finger domain	249	286	IPR002867	-
	Mtr4g2311	546	SUPERFAMILY	RING/U-box	155	232	-	-
	Mtr4g2311	546	ProSiteProfiles	TRIAD supradomain profile.	81	299	IPR044066	-
	Mtr4g2311	546	Gene3D	-	221	439	-	-
	Mtr4g2311	546	PANTHER	RBR-TYPE E3 UBIQUITIN TRANSFERASE	1	419	-	-
	Mtr4g2311	546	PANTHER	RBR-TYPE E3 UBIQUITIN TRANSFERASE	464	507	-	-
	Mtr4g2311	546	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	79	166	IPR013083	-
	Mtr4g2311	546	PANTHER	RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING	464	507	IPR031127	GO:0004842\|GO:0016567
	Mtr4g2311	546	PANTHER	RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING	1	419	IPR031127	GO:0004842\|GO:0016567
	Mtr4g2311	546	ProSiteProfiles	Zinc finger CCHC-type profile.	212	225	IPR001878	GO:0003676\|GO:0008270
	Mtr4g2311	546	SMART	ibrneu5	153	225	IPR002867	-
	Mtr4g2311	546	SMART	ibrneu5	229	295	IPR002867	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mtr4g2311	Mtr-Chr4	36580812	36583097	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mtr4g2311	465	507	ARIADNE family	AT1G65430	55.814	1.10e-07	52.8

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mtr4g2311	K11968		-	gmx:100801350	417.927