Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2304 ATGCCTAAATCAAGCAAGAAATCCGCTACCAAAGTTGATGCTGCTCCTGTTGTTGTTTCTCCAGTGAAGTCTGGAAAGAAAGGCAAGAGGCAGGCTGAGGAAGAAGTCAAGGCAGTGAGTGCAAAGAAGCAAAAGGTAGAAGAGGTTGCCGCCAAGCAAAAGGCCTTGAAGGTAGTCAAGAAGGAGGAAAGTAGTTCGGAGGAATCCTCTGAATCTGAGGATGAGCAACCTGTTGTAAAAGCTCCCGCTCCTTCAAAGAAGACCCCAGCTAAAAAAGGGAATGTGAAGAAAGCCCAGCCAGAGACCACTTCAGAGGAATCTGACTCTGACAGCTCCTCTTCCGACGAGGAAGAAGTGAAAAAACCTGCAGCTAAAGCTGTTCCATCTAAAAATGGGAGTGCACCCGCAAAGAAAGCTGCTTCTGATGAAGAAGATACTGATGAATCTTCTGATGAAGATGAGGAAGATGAGAAACCTGCTGCAAAAGCTGTTCCTTCCAAGAATGGGAGTGTACCCGCAAAGAAAGCTGATACTGAGTCTTCCGATGAAGACTCTGAATCTTCTGATGAAGAAGATAAGAAACCTGCAGCAAAAGCCTCTAAAAATGTGAGTGCACCCACAAAGAAAGCTGCAAGTTCTTCTGATGAAGAATCTGATGAAGAATCCGATGAAGATGAAGATGCAAAGCCCGTGTCTAAGCCTGCAGCTGTTGCAAAAAAGAGTAAGAAAGATAGCTCAGATTCTGACGATGAAGATGATGATAGCAGCTCTGACGAAGACAAGAAGCCTGTGGCTGCTAAGAAAGAGGTTAGTGAATCGGAGAGTGATTCGTCTGATGACGAGGATAAGATGAATGTTGACAAGGATGGTTCCGACTCCGACGAGAGTGAGGAGGAGAGTGAGGATGAACCATCGAAAACACCTCAGAAAAAGATCAAGGACGTGGAGATGGTTGATGCTGGCAAATCTGGGAAAAAAGCTCCTAATACCCCAGCTACACCAATCGAGAACAGTGGCTCAAAGACATTATTTGTTGGGAACCTGTCCTTCAGTGTGCAACGTTCTGACATAGAAAAGTTCTTCCAAGACTGCGGAGAGGTTGTTGATGTACGTTTTTCTTCGGATGAGGAGGGAAGGTTTAAAGGCTTTGGACATGTTGAGTTTGCATCTGCAGAGGCAGCCCAAAGCGCCCTTGAGATGAATGGGCAAGAACTGTTGCAACGTGCTGTCCGACTTGATTTAGCTCGGGAGAGGGGTGCATTTACTCCTAATAATAATAGTAACTACTCAGCCCAAAGTGGTGGAAGAGGCCAGTCTCAAACAGTATTTGTCAGGGGTTTTGATAAGAATCTTGGAGAGGATGAGATAAGAGCTAAATTGATGGAGCATTTTGGTGGTACTTGTGGGGAACCTACAAGGGTGTCAATCCCAAAAGATTTTGAATCTGGTTATTCTAAGGGGTTTGCATACATGGACTTCAAAGATTCTGATAGCTTCAGCAAAGCTCTTGAACTTCATGAAAGTGAACTTGATGGTTATCAGTTGTCAGTGGATGAAGCAAAACCTAGAGATAGTCAAGGTTCTGGTGGTAGAGGTGGAGGTGGAAGGAGTGGTGGTGGTCGATTTGGTGGAGGTGGAAGAAGCGGTGGATTTGGTGGTAGGAGTGGTGGAAGAGGTGGAGGTCGATTTGGTGGAAGGGATAGTGGCGGTAGAGGTGGTCGAGGAGGAAGAGGTGGTCGTGGAGGATTCAATAAACCAAGCTTTGCTTCTGAAGGGAAAAAGACTACTTTTGCAGACGACTAG 1803 0.4576 MPKSSKKSATKVDAAPVVVSPVKSGKKGKRQAEEEVKAVSAKKQKVEEVAAKQKALKVVKKEESSSEESSESEDEQPVVKAPAPSKKTPAKKGNVKKAQPETTSEESDSDSSSSDEEEVKKPAAKAVPSKNGSAPAKKAASDEEDTDESSDEDEEDEKPAAKAVPSKNGSVPAKKADTESSDEDSESSDEEDKKPAAKASKNVSAPTKKAASSSDEESDEESDEDEDAKPVSKPAAVAKKSKKDSSDSDDEDDDSSSDEDKKPVAAKKEVSESESDSSDDEDKMNVDKDGSDSDESEEESEDEPSKTPQKKIKDVEMVDAGKSGKKAPNTPATPIENSGSKTLFVGNLSFSVQRSDIEKFFQDCGEVVDVRFSSDEEGRFKGFGHVEFASAEAAQSALEMNGQELLQRAVRLDLARERGAFTPNNNSNYSAQSGGRGQSQTVFVRGFDKNLGEDEIRAKLMEHFGGTCGEPTRVSIPKDFESGYSKGFAYMDFKDSDSFSKALELHESELDGYQLSVDEAKPRDSQGSGGRGGGGRSGGGRFGGGGRSGGFGGRSGGRGGGRFGGRDSGGRGGRGGRGGRGGFNKPSFASEGKKTTFADD* 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2304 600 Coils Coil 29 49 - -
Mtr4g2304 600 PANTHER BNAA08G02930D PROTEIN 213 595 - -
Mtr4g2304 600 MobiDBLite consensus disorder prediction 258 274 - -
Mtr4g2304 600 Gene3D - 330 421 IPR012677 -
Mtr4g2304 600 MobiDBLite consensus disorder prediction 516 600 - -
Mtr4g2304 600 CDD RRM1_NUCLs 342 418 IPR034349 -
Mtr4g2304 600 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 341 417 IPR000504 GO:0003723
Mtr4g2304 600 SMART rrm1_1 441 518 IPR000504 GO:0003723
Mtr4g2304 600 SMART rrm1_1 342 413 IPR000504 GO:0003723
Mtr4g2304 600 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 442 515 IPR000504 GO:0003723
Mtr4g2304 600 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 343 410 IPR000504 GO:0003723
Mtr4g2304 600 MobiDBLite consensus disorder prediction 1 338 - -
Mtr4g2304 600 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 440 522 IPR000504 GO:0003723
Mtr4g2304 600 SUPERFAMILY RNA-binding domain, RBD 329 438 IPR035979 GO:0003676
Mtr4g2304 600 Gene3D - 422 555 IPR012677 -
Mtr4g2304 600 SUPERFAMILY RNA-binding domain, RBD 439 552 IPR035979 GO:0003676
Mtr4g2304 600 MobiDBLite consensus disorder prediction 303 321 - -
Mtr4g2304 600 MobiDBLite consensus disorder prediction 227 247 - -
Mtr4g2304 600 MobiDBLite consensus disorder prediction 26 67 - -
Mtr4g2304 600 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 213 595 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2304 Mtr-Chr4 36540825 36545939 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g2304 339 516 Eukaryotic Initiation Factors Gene Family AT4G34110 25.556 2.08e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2304 K11294 - gmx:100779929 386.726