Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mtr4g2279 | ATGAGCACTCGGACAAGCAGGGTGCCTGTTGGTATCAGAACTAACCGGCGGAGGAAGGCAGCTATTGATCTTGACCTTAACCGAGTACCGGCTGCTGAACATTCAACTGCTCGGAATCCGATTGCTGAGAATCCATCTGGTGAGAATCGTGAGCAGGAGAGGCGTTTGACTCAGTTGGGGCCTCAAGAAGTTGAAGTTCAAGCTAACCAGCAACAGGAAGTAGAAGTTCAAGCTAATCAGCTACAGCTAGTTGCGCAACCTGAACCTACTTTGATTGATGTGGAAGCCATTGATGACGACGATGTTGTTTTATCTTCCCCGAGGGCTTTTGCTGAGGCCAAAAACAATTCTCGAAGAAATCGTGGAAGGACTGTAGTTGATGTCGATTTAGTCATGTTTTTTGCAGAAGAGCAGATTAGGTTAAGCAACAATAATCGCAACAAACGCAGACGAGAATCTCCAAAACGATCAATTTTCAACTGTGATCTTTATATAAATTTGGACGCCAGCAGCAGCAATACGATGGAAAGTGTCAAAAAGCCACCTGAGCCTCCAAAGGAACCTGTCTTCACCTGTCCTATATGCATGGGCCCTATGGTTGAAGAAATGTCAACAAGGTGTGGTCATATTTTTTGCAAGTCGTGTATCAAGGCTGCTATAAGTGCTCAGGCAAAATGTCCCACCTGTAGAAAAAAGATTACTGTGAAAGAGCTTATAAGGGTGTTTCTGCCAACAACTGCTTGA | 744 | 0.4476 | MSTRTSRVPVGIRTNRRRKAAIDLDLNRVPAAEHSTARNPIAENPSGENREQERRLTQLGPQEVEVQANQQQEVEVQANQLQLVAQPEPTLIDVEAIDDDDVVLSSPRAFAEAKNNSRRNRGRTVVDVDLVMFFAEEQIRLSNNNRNKRRRESPKRSIFNCDLYINLDASSSNTMESVKKPPEPPKEPVFTCPICMGPMVEEMSTRCGHIFCKSCIKAAISAQAKCPTCRKKITVKELIRVFLPTTA* | 248 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mtr4g2279 | 247 | ProSiteProfiles | Zinc finger RING-type profile. | 192 | 230 | IPR001841 | - | |
| Mtr4g2279 | 247 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 164 | 245 | IPR013083 | - | |
| Mtr4g2279 | 247 | Pfam | Zinc finger, C3HC4 type (RING finger) | 192 | 229 | - | - | |
| Mtr4g2279 | 247 | ProSitePatterns | Zinc finger RING-type signature. | 207 | 216 | IPR017907 | - | |
| Mtr4g2279 | 247 | PANTHER | ELFLESS, ISOFORM B | 5 | 246 | - | - | |
| Mtr4g2279 | 247 | PANTHER | RING ZINC FINGER-RELATED | 5 | 246 | - | - | |
| Mtr4g2279 | 247 | SUPERFAMILY | RING/U-box | 191 | 236 | - | - | |
| Mtr4g2279 | 247 | SMART | ring_2 | 192 | 229 | IPR001841 | - | |
| Mtr4g2279 | 247 | MobiDBLite | consensus disorder prediction | 27 | 55 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Mtr4g2279 | Mtr-Chr4 | 36246932 | 36251155 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Mtr4g2279 | 1 | 246 | C3H Transcription Factor Family | AT5G48655 | 45.783 | 1.84e-46 | 152 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mtr4g2279 | K22651 | - | gmx:100792853 | 232.261 |