Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2277 ATGGTAGTGATCATGCAAGAGCAGCATCAACAACAACAGCAGCAGCAGCAGAATCCCAATCCCTCTGCACTGTTGCCACAACTCACCACCAATCAAAATTCCTCATCAATCGCCACTTCCCTTAGGTCACCCACCTCCACCACCGCTACCGCCGCCGCCCAATCCCAACTTTACTCGCCTCTTCATATCACTTCCCACCGCCAACCCCTACTTCCGGCGCCAGTCGCAGCTGTTCTCCCGTCAGGGGAGCCGGTTTCGACGGCGCCGGTGAATTTCCAGCTGGCAAGAGTCCGGCTGTCGGACATTGCTCCTTATGACGGTGCGCCGGCGGGGCCATATGCGAGGGCAGTGGAAATGCTGTGTTCGTCTTTGTTGAAGTACAATGCGGCGGTGATTGAATTAGGGAGTGAAGATACTGCTTTGATGCGTTGTGGGTTGGAAGGTGCTAGATTGTTCTTTAGGAGTAGAGCACATCTTGGTGTTGGGAAGGGAAGCCGTGGGGTTTACATGTATAGGGCAGGAAGGGCTTTGGAGGATTGTGATTCATCTCCTCCTTGCATGGCTGATATTTTTAGGTGCATGGGAAAGGCTTCTCGTGCAGCTTTGTCGGCCATTGCAAGGCATCTGCGCCTCAGAAGCGATGTTTTTAACCAACTGCTTGATGATGCTCCATTACCTGCTAACGAGGTGTCTGCTTCTGTTCTTGTTGGGACCTACTCACATGCTTCTTTGCAAAACGGAAAAGGTGCCATTGGAGGTGGTAAGCCTACCGTGAATGGTGAAGTTGAGAAGGGCTTGTTGACACTGATATCTTCTGACACTCCTGGTCTTCAGGTATGTGACCCCAATGGCCGCTGGTATCTGGCAGACAGCGGGTCTGGGCCTGGAGATCTTTTACTGATAACAGGCCAGGCTCTTAGCCATGCCACTGCAGGCCTACATCCAGCCGCATCATATAGAGCTTCTCCAGATTGTTTTATGAGTCCTAATAGTGGAGGAAGGACTTCACTTGCATATAGACTCATGCCACAGGGCAATGCTATATTGGATTGTTCTCCAATTGCAGCAGCTGGTCATGTTATTCCTCAAAGATATGTTCCAATATCTGTAAGCCAATTTATGGATGACCTTGCTGCTGAAGAATTGATTGGCAGCAGATGTGACAATGACGATGTTGCTCAAAGAAATGTGAATAAGGACCCATCATTAAGAAGTGTTCTATCAGATCCTTTGTCTGGCTCGTTCCTGGAAGATGCAATGCTTGTCTCATGTGGACACTCTTTTGGTGGTCTCACACTGAGGAGAGTCATTGAAACATCAAGGTGCACCCTCTGCAATGTTGATATTGACCCCAGTTCTCTGATCCCAAATCACGCTCTTAGAGCTGCAGCAGCTGCTGTCAAGCATGAGGATGATCGAAGGTTATTTCGTAATGCTGCTCTTCGAAAGCGGCGGAAAGAAATGGGTGAACCAATGGATCCAATCAGAAGAGTGAACAGGGAAAATGGAGATTTTACTTCACCTGATGGACTCCAGCGGGGAGTACAATATCCATTTTCAGTAAATGAGAAAGTTATTATTAAGGGTAACAGGAGAACACCCGAAAAATTTGTTGGGAAAGAAGCTGTCATTACATCTCAGTGTCTCAATGGCTGGTATTTACTCAAGATTATTGGATCTGGAGAGAACGTCCGCCTGCAGTATCGTTCTCTCAGAAAGCTCTTAAACTCACCAACCATGGAGGACCAGGTTCAGTTGCAACCAGTTCAAAATAGCAGCTCTTAA 1785 0.4824 MVVIMQEQHQQQQQQQQNPNPSALLPQLTTNQNSSSIATSLRSPTSTTATAAAQSQLYSPLHITSHRQPLLPAPVAAVLPSGEPVSTAPVNFQLARVRLSDIAPYDGAPAGPYARAVEMLCSSLLKYNAAVIELGSEDTALMRCGLEGARLFFRSRAHLGVGKGSRGVYMYRAGRALEDCDSSPPCMADIFRCMGKASRAALSAIARHLRLRSDVFNQLLDDAPLPANEVSASVLVGTYSHASLQNGKGAIGGGKPTVNGEVEKGLLTLISSDTPGLQVCDPNGRWYLADSGSGPGDLLLITGQALSHATAGLHPAASYRASPDCFMSPNSGGRTSLAYRLMPQGNAILDCSPIAAAGHVIPQRYVPISVSQFMDDLAAEELIGSRCDNDDVAQRNVNKDPSLRSVLSDPLSGSFLEDAMLVSCGHSFGGLTLRRVIETSRCTLCNVDIDPSSLIPNHALRAAAAAVKHEDDRRLFRNAALRKRRKEMGEPMDPIRRVNRENGDFTSPDGLQRGVQYPFSVNEKVIIKGNRRTPEKFVGKEAVITSQCLNGWYLLKIIGSGENVRLQYRSLRKLLNSPTMEDQVQLQPVQNSSS* 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2277 594 MobiDBLite consensus disorder prediction 1 46 - -
Mtr4g2277 594 Gene3D - 174 382 IPR027443 -
Mtr4g2277 594 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 87 592 - -
Mtr4g2277 594 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 396 468 IPR013083 -
Mtr4g2277 594 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED 87 592 - -
Mtr4g2277 594 SUPERFAMILY Clavaminate synthase-like 185 375 - -
Mtr4g2277 594 SUPERFAMILY RING/U-box 403 469 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2277 Mtr-Chr4 36220207 36231899 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g2277 403 581 Plant U-box Gene Family AT5G05230 40.884 4.58e-37 139
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2277 - - adu:107477161 887.1