Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2273 ATGGCGTCTTCTTTCGTGAAGCTTGATGATTCTCCAATGTTCCAGAAACAGTTATTTTCTATTGAAGAAACGGCCGATGAGTTAAAGGATCGGTGCCAGAATCTATTCAAAGGGTGTAAGAAGTTTATGACAGCTATAGGGGAAGCATATAATGGAGAACTTGCCTTTGCTGATTCATTAGAAGCATTTGGAGGTGGCCATGACGATCCTGTTAGTGTATCGATTGGAGGACCCGTTATATCCAAGTTTATCACCGCACTACGTGAATTAGCTACTTTTAAAGAGCTTCTTCGCTCACAGGTAGAGCATGTATTGGTTGACCGGTTGACAGAGTTTATAAATGTTGATTTGCAAGATGCCAAGGAATCTCGCCGTCGTTTTGACAAATCTGTGCATTCTTATGATCAGTCACGAGAAAAGTTTGTTTCTTTGAAGAAGAATACACCGGAAGATATTGTTGCTGAATTAGAAGAGGGTCTACAAAATTCGAAGTCATCATTTGAGAAAAGCCGCTTCAATCTAGTACACTCTCTCATGAATATTGAAGTGAAAAAGAAGTACGAGTTCTTGGAATCCATAAGTGCAATAATGGATGCCCATCTGAGATACTTTAAACTGGGATACGACTTACTGAGCCAAATGGAGCCTTATATTCACCAGGTGCTAACATATGCTCAACAATCTAAAGAACAAGCTAATATTGAGCAAGATAAGCTTGCAAAACGGATACAGGAATACAGAACACAGGCAGAGCTGGAAAACATACGAGCTTCTAGCAGCAATACTGAACCGATGCATGGTGCTGATGGCTACCGTCCTTTAGGTTTGAAACCTTACAAAAGCTTTGAAGCAGGGATGCAGTCTGCAACCAAAGGCGAGATTCAAACAGTTAAACAAGGCTATCTGTTAAAACGATCATCAAGGGTGCGAGGAGATTGGAAAAGGAGGTTTTTTGTACTTGATAACCATGGAAGTTTATATTATTACAGATCAAAAGGAACCAAACCCGCGGGATTTCAGTCATATAATTACAGTCGTTCTTCTGAACAAAATAGTGGCATGTTTGGTAGATTCCGTTCAAGGCATAATAGGGCAGTGTCACTAAATGAGGATATTTTGGGTTGTTGTCCAGTCGATCTGTGCACATCCACCATAAAGATGGATGCAGAGGATACAGATCTACGGCTTTGCTTCCGCATTATTTCTCCCTCAAAAACATATACGCTGCAGGCTGAAAACGAAGCTGATAGGATGGACTGGGTAAACAAAATTACTGGAGCTATCACCTCGCTTTTTAATTTTCAGTTTCTTCAACAGCCACATTATGGTAAATTGCATTCAGAAAATAAAAACTCAGTGACTGGTTCTTCTTTGACAAGTCAACAAGAGGATAGTAATAAATCTTTGATGGACAATGCATTTTCCGAAAAAGTGGATAGTGTCTCTAATATTTTAAGGGGAGTTCCTGGGAATGATAAGTGTGCTGAGTGCAGTGCTCCTGAACCAGACTGGGCATCTTTAAACCTTGGTATACTGTTGTGTATTGAATGTTCTGGAGTGCATCGCAATCTTGGAGTTCATATCTCAAAGGTGAGATCTATAACATTAGATGTGAAGGTTTGGGAACCTACCATTTTGGAGTTATTCAATAATTTAGGTAATACTTATTGTAATTCTATTTGGGAGGGCTTGCTTCTACATCATAATGAAAGAGTAGGGGAATCAGACGTGCCTTCGAAACCATGCTCCACAGATCCCTCCCAATTTAAAGAAAAGTACATCCATGCGAAGTATGTAGAGAAATCACTAGTCATCCGGGAAGAGGATATACCCGAAAATCCTTCAGTCTTCGCAAAAATCTGGCAAGCAGTTCAGACTATAAATGTACGAGAAGTGTATCGCCTTATTGTAACATCAACTTCAAATCCGATAAACACGAAATATGACGATGTGGTTCCCCATGCTGATACTGAAGGACCTCAGCATGACCCTGAAGCCTGTTTGAGGATTAAAGAGGCTAATGAAACAGAAAGTTGTTTCCGTGGTTGGTCTATATTACATCTGGCATGTCATTCTGATAGTAAACTAATGGTTGAGTTGTTGCTCCAATTTGGTGCTGATATAAACATGTGTGACTATCATGGAAGGACTCCATTGCACCACTGCATTTCTAGTGGGAAAAATCCATTGGCTAAGTTTTTACTAAGAAGGGGCGCAAAACCGTCAGTTAAAGATGCTGCTGGACATACTGCGCTTGAAAGAGCCATGGAGATGGGAGCAATAACTGACGAAGAGCTATTTATCCTGCTTGTTGAACGCCAGTAA 2325 0.4039 MASSFVKLDDSPMFQKQLFSIEETADELKDRCQNLFKGCKKFMTAIGEAYNGELAFADSLEAFGGGHDDPVSVSIGGPVISKFITALRELATFKELLRSQVEHVLVDRLTEFINVDLQDAKESRRRFDKSVHSYDQSREKFVSLKKNTPEDIVAELEEGLQNSKSSFEKSRFNLVHSLMNIEVKKKYEFLESISAIMDAHLRYFKLGYDLLSQMEPYIHQVLTYAQQSKEQANIEQDKLAKRIQEYRTQAELENIRASSSNTEPMHGADGYRPLGLKPYKSFEAGMQSATKGEIQTVKQGYLLKRSSRVRGDWKRRFFVLDNHGSLYYYRSKGTKPAGFQSYNYSRSSEQNSGMFGRFRSRHNRAVSLNEDILGCCPVDLCTSTIKMDAEDTDLRLCFRIISPSKTYTLQAENEADRMDWVNKITGAITSLFNFQFLQQPHYGKLHSENKNSVTGSSLTSQQEDSNKSLMDNAFSEKVDSVSNILRGVPGNDKCAECSAPEPDWASLNLGILLCIECSGVHRNLGVHISKVRSITLDVKVWEPTILELFNNLGNTYCNSIWEGLLLHHNERVGESDVPSKPCSTDPSQFKEKYIHAKYVEKSLVIREEDIPENPSVFAKIWQAVQTINVREVYRLIVTSTSNPINTKYDDVVPHADTEGPQHDPEACLRIKEANETESCFRGWSILHLACHSDSKLMVELLLQFGADINMCDYHGRTPLHHCISSGKNPLAKFLLRRGAKPSVKDAAGHTALERAMEMGAITDEELFILLVERQ* 775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2273 774 ProSiteProfiles PH domain profile. 295 429 IPR001849 -
Mtr4g2273 774 ProSiteProfiles Ankyrin repeat region circular profile. 714 745 - -
Mtr4g2273 774 SUPERFAMILY BAR/IMD domain-like 8 318 IPR027267 -
Mtr4g2273 774 Pfam Ankyrin repeats (3 copies) 674 745 IPR002110 GO:0005515
Mtr4g2273 774 Gene3D Arf GTPase activating protein 459 611 IPR038508 -
Mtr4g2273 774 Gene3D - 616 765 IPR036770 -
Mtr4g2273 774 Pfam Putative GTPase activating protein for Arf 483 604 IPR001164 GO:0005096
Mtr4g2273 774 Pfam PH domain 297 428 IPR001849 -
Mtr4g2273 774 SMART ANK_2a 681 710 IPR002110 GO:0005515
Mtr4g2273 774 SMART ANK_2a 714 743 IPR002110 GO:0005515
Mtr4g2273 774 Pfam BAR domain of APPL family 8 233 - -
Mtr4g2273 774 SMART arf_gap_3 479 611 IPR001164 GO:0005096
Mtr4g2273 774 SMART PH_update 296 431 IPR001849 -
Mtr4g2273 774 ProSiteProfiles Ankyrin repeat region circular profile. 681 712 - -
Mtr4g2273 774 PANTHER ADP-RIBOSYLATION FACTOR GTPASE-ACTIVATING PROTEIN AGD2 3 770 - -
Mtr4g2273 774 PRINTS HIV Rev interacting protein signature 491 510 IPR001164 GO:0005096
Mtr4g2273 774 PRINTS HIV Rev interacting protein signature 510 527 IPR001164 GO:0005096
Mtr4g2273 774 PRINTS HIV Rev interacting protein signature 533 554 IPR001164 GO:0005096
Mtr4g2273 774 Gene3D Arfaptin homology (AH) domain/BAR domain 7 253 IPR027267 -
Mtr4g2273 774 CDD PH_ACAP 298 433 - -
Mtr4g2273 774 ProSiteProfiles Ankyrin repeat profile. 714 746 IPR002110 GO:0005515
Mtr4g2273 774 SMART 5bar 13 220 IPR004148 GO:0005515|GO:0005737
Mtr4g2273 774 CDD BAR_SFC_plant 16 217 IPR035670 -
Mtr4g2273 774 Gene3D - 288 439 IPR011993 -
Mtr4g2273 774 PANTHER CENTAURIN/ARF 3 770 IPR045258 GO:0005096
Mtr4g2273 774 SUPERFAMILY ArfGap/RecO-like zinc finger 481 604 IPR037278 -
Mtr4g2273 774 SUPERFAMILY PH domain-like 295 447 - -
Mtr4g2273 774 ProSiteProfiles ARF GTPase-activating proteins domain profile. 479 611 IPR001164 GO:0005096
Mtr4g2273 774 ProSiteProfiles Ankyrin repeat profile. 681 713 IPR002110 GO:0005515
Mtr4g2273 774 Coils Coil 229 249 - -
Mtr4g2273 774 SUPERFAMILY Ankyrin repeat 671 772 IPR036770 -
Mtr4g2273 774 CDD ArfGap 483 598 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2273 Mtr-Chr4 36186726 36198210 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g2273 470 598 C2H2 Transcription Factor Family AT3G07940 37.692 2.10e-18 84.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2273 K12489 - gmx:100796740 1298.11