Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2272 ATGTCTTCCATTATGTCCCCATCTCTCTCTGAAGGCAAGAAGAAGAAGAAAAACACCAACAAACAATCAGAACCAGAAGAACCACAAAACCCACAAGATTTCATGATCAAACCTGAAAAACTTACACCTACAATCGACACCTCAAACTGGCCCATTTTGTTGAAAAACTACGACCGTCTCAATGTCCGTACTGGTCACTATACCCCCCTTCCAGCTGGTCACTCACCTCTCAAACGACCCATTGCTGATTATCTGAAATATGGTGTTATCAATCTTGATAAGCCTGCCAACCCTAGTTCTCATGAAGTTGTTGCTTGGATCAAGCGTATTCTTCGTGTCGAGAAGACGGGTCATAGTGGTACTCTTGATCCTAAGGTTACTGGGAATTTGATTGTTTGTATTGACAGAGCAACGAGGTTGGTGAAATCTCAACAAGGTGCTGGAAAAGAGTATGTTTGTATTGCTAGGCTTCATTCTGCCGTTCCTGATGTTGCTAAGGTAGCTCGTGCTCTTGAAACTTTAACTGGTGCTGTTTTTCAAAGACCACCTTTGATTTCTGCTGTTAAGAGACAACTTAGGATTAGAACTATTTATGAAAGTAAAATGCTTGAATATGATGCTGAGAAACATTTAGTTGTGTTTTGGATTTCGTGTGAGGCGGGTACTTATGTTAGGACTATGTGTGTTCATTTGGGTTTAGTTCTTGGTGTTGGTGGTCATATGCAAGAGCTTAGGAGGGTTAGGTCTGGGATTATGGGTGAGAAGGATAATATGGTTACCATGCATGATGTTATGGATGCTCAGTATGTTTATGATAAGGAGAAGAGCGATGAGACTTATTTGAGGAGGGTTGTTATGCCTTTGGAGGTTCTTTTGACTAGTTATAAGAGGCTAGTTGTTAAGGATTCGGCTGTGAATGCTATTTGTTATGGTGCTAAGTTGATGATTCCGGGTTTGCTTAGGTTCGAGAATGATATTGAACCTGGTGAGGAGGTTGTGCTTATGACTACTAAGGGTGAAGCTATTGCCCTTGGTATTGCTGAGATGACTACTGCTGTTATGGCTACTTGTGATCATGGTATTGTTGCTAAGATCAAGAGGGTGGTTATGGATAGGGATACTTATCCGAGGAAATGGGGTTTGGGTCCTAGGGCTTCTATGAAGAAGAAGCTGATTGCTGCAGGGAAGCTGGATAAGCATGGGAAGCCGAATGAGAGTACTCCTCAAGAGTGGATGAGGAATGTTGTTTTGCCTACTGGTGGGGATGCCGTGATTGCTGGTATGGCGGCTGCTACTGGAACTGAAGATGTGAAGAAAGAGGTTGCTGATGAAGAGGGTGAGAAGGTTAAGAAGGATGATGGAGAAGGGCGTAAGAGAAAGAAACATGAATCTGCCGATAGCCCTGCTCCGGCTAAGAAGTCCAAAGTTGCTGAAGTTGATGGCGAAGAAAAAGTGAAGACCAAGAAAGTAGATGACGCGGCTGTGGAGGTTGAAGATGACAAGAAAGAAAAGAAGAAGAAAAAGAAGAAGGATAAAGAGAATGGAGCTGCTGCATCTGATGAGGAGAAGGTTGAAAAGGAGAAGAAAAAGAAGCACAAGGAAAAGGGTGAAGATGGTTCTCCTGAAGTGGAGAAGTCTGATAAGAAGAAAAAGAAGCACAAGGAAACGAGTGAAGTTGGTTCGCCTGAAGTGGACAAGTCTGAGAAGAAGAAAAAGAAGAAAGACAAAGAAGCCAAAGATAATGCTGCCGATATCAGTAACGGAAATGATGAGAGCAATGCTGATAGAAGTGAGAAGAAGCACAAGAAAAAGAAAAACAAAGATGCCCAAGAAGAATAG 1839 0.4247 MSSIMSPSLSEGKKKKKNTNKQSEPEEPQNPQDFMIKPEKLTPTIDTSNWPILLKNYDRLNVRTGHYTPLPAGHSPLKRPIADYLKYGVINLDKPANPSSHEVVAWIKRILRVEKTGHSGTLDPKVTGNLIVCIDRATRLVKSQQGAGKEYVCIARLHSAVPDVAKVARALETLTGAVFQRPPLISAVKRQLRIRTIYESKMLEYDAEKHLVVFWISCEAGTYVRTMCVHLGLVLGVGGHMQELRRVRSGIMGEKDNMVTMHDVMDAQYVYDKEKSDETYLRRVVMPLEVLLTSYKRLVVKDSAVNAICYGAKLMIPGLLRFENDIEPGEEVVLMTTKGEAIALGIAEMTTAVMATCDHGIVAKIKRVVMDRDTYPRKWGLGPRASMKKKLIAAGKLDKHGKPNESTPQEWMRNVVLPTGGDAVIAGMAAATGTEDVKKEVADEEGEKVKKDDGEGRKRKKHESADSPAPAKKSKVAEVDGEEKVKTKKVDDAAVEVEDDKKEKKKKKKKDKENGAAASDEEKVEKEKKKKHKEKGEDGSPEVEKSDKKKKKHKETSEVGSPEVDKSEKKKKKKDKEAKDNAADISNGNDESNADRSEKKHKKKKNKDAQEE* 613
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2272 612 Coils Coil 490 514 - -
Mtr4g2272 612 MobiDBLite consensus disorder prediction 591 612 - -
Mtr4g2272 612 Pfam tRNA pseudouridylate synthase B C-terminal domain 225 292 IPR032819 -
Mtr4g2272 612 SMART pua_5 296 370 IPR002478 GO:0003723
Mtr4g2272 612 Pfam PUA domain 296 368 IPR002478 GO:0003723
Mtr4g2272 612 SMART DKCLD_2 46 104 IPR012960 -
Mtr4g2272 612 TIGRFAM unchar_dom_2: uncharacterized domain 2 291 367 IPR004521 GO:0003723
Mtr4g2272 612 MobiDBLite consensus disorder prediction 436 584 - -
Mtr4g2272 612 MobiDBLite consensus disorder prediction 435 612 - -
Mtr4g2272 612 Pfam TruB family pseudouridylate synthase (N terminal domain) 108 224 IPR002501 GO:0006396
Mtr4g2272 612 SUPERFAMILY Pseudouridine synthase 47 293 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Mtr4g2272 612 Gene3D Pseudouridine synthase 80 287 - -
Mtr4g2272 612 PANTHER CENTROMERE/MICROTUBULE BINDING PROTEIN CBF5 14 535 IPR004802 GO:0006396
Mtr4g2272 612 MobiDBLite consensus disorder prediction 1 36 - -
Mtr4g2272 612 CDD PseudoU_synth_hDyskerin 86 268 - -
Mtr4g2272 612 PANTHER H/ACA RIBONUCLEOPROTEIN COMPLEX SUBUNIT DKC1 14 535 - -
Mtr4g2272 612 Pfam DKCLD (NUC011) domain 47 104 IPR012960 -
Mtr4g2272 612 SUPERFAMILY PUA domain-like 295 376 IPR015947 -
Mtr4g2272 612 Gene3D PUA domain 47 379 IPR036974 GO:0003723
Mtr4g2272 612 TIGRFAM CBF5: putative rRNA pseudouridine synthase 54 380 IPR004802 GO:0006396
Mtr4g2272 612 ProSiteProfiles PUA domain profile. 295 370 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2272 Mtr-Chr4 36182781 36185086 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g2272 9 475 NAC Transcription Factor Family AT3G57150 80.171 0.0 735
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2272 K11131 - gmx:100806355 785.023