Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2254 ATGGCAAATTGGGGTTGTTTCTTTAGAGAATATGGAAAAATGGATAATAGTTTTGTTGAGACGGTCCAAATACAACAGTTATATGAAAGGAGAGAATTTTTTGAATCTCTTGCACAAAATAATATTGCATTGTCTATGAGGGAAAATAGAAATAATGCATGGTCTATGAGGGAAAGGGGACATTACATAGTTGATTTACAGCAGATCAATATGTCTTTCGGCACGATTGCAGAGATTGCTAGGTGTGCAATAAGAGCATTGCCGCCGGTTAAAAGCTTTGATGGTGACAAAAACACTGATTGTCCTATTTGCGTGGATGAATTCACAAAAGGCGAGATGATTCAATCTTTTGGAGTGTGTGGCCATGAATTTCATACTGCGTGTCTCAACTCGTGGTTACTTGGAGGAAAAACTACTTGTCCAGTTTGTCGCCATGATTTGTTGTCTAACTATTAG 456 0.3794 MANWGCFFREYGKMDNSFVETVQIQQLYERREFFESLAQNNIALSMRENRNNAWSMRERGHYIVDLQQINMSFGTIAEIARCAIRALPPVKSFDGDKNTDCPICVDEFTKGEMIQSFGVCGHEFHTACLNSWLLGGKTTCPVCRHDLLSNY* 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2254 151 SUPERFAMILY RING/U-box 92 148 - -
Mtr4g2254 151 CDD RING-H2 101 144 - -
Mtr4g2254 151 PANTHER RING FINGER DOMAIN-CONTAINING 14 149 - -
Mtr4g2254 151 ProSiteProfiles Zinc finger RING-type profile. 101 144 IPR001841 -
Mtr4g2254 151 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 14 149 - -
Mtr4g2254 151 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 149 IPR013083 -
Mtr4g2254 151 Pfam Ring finger domain 100 144 IPR001841 -
Mtr4g2254 151 SMART ring_2 101 143 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2254 Mtr-Chr4 36010509 36011081 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g2254 31 148 C3H Transcription Factor Family AT2G27940 30.833 6.07e-12 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2254 - - mtr:MTR_4g073810 307.375