Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2252 ATGAGTGGGTCAAAATTAACTGGGAAGGTGAAATGGTTCAATGATCAGAAGGGGTTTGGATTCATCACCCCTGATGATGGTAGTGAGGAGTTGTTTGTTCACCAATCTCAGATCCAGACTGATGGATTCCGTTCTCTTGCTGAAGGTGAATCTGTTGAGTATCAGATTGAGTCTGATAACGATGGAAGATCCAAGGCTGTTAGTGTGACTGGTCCTGATGGTGCTTCTGTTCAGGGATCGAGACGCGGTGGTGGCGGCGGTGGTGGTTATGAGCGTGGTGGAGGTGGTTATGGTGGAGGCGGTGGTGGTTATGGTGGTGGAGGTGGTGGTTATGGTGGAAGAGGAGGTGGTGGCTATGGTGGTGGTGGAGGTGGATATGGTGGAGGAGGTGGTGGTTATGGTGGTGGTGGAAGAGGTGGAGGCCGTGGAGGAGGCGGTGGTGGATGTTACAACTGTGGTGAGTCTGGCCACATGGCGAGGGAGTGTACCAGCGGTGGAGGTGGTGGTGGTGGAAGGTATGGTGGTGGTGGTGGTGGTGGAGGCGGTGGCGGTGGCGGTGGAAGCTGCTACAGCTGTGGTGAATCTGGTCACTTTGCAAGAGATTGTCCAACAGGCAGCGCTCGTTAG 627 0.5455 MSGSKLTGKVKWFNDQKGFGFITPDDGSEELFVHQSQIQTDGFRSLAEGESVEYQIESDNDGRSKAVSVTGPDGASVQGSRRGGGGGGGYERGGGGYGGGGGGYGGGGGGYGGRGGGGYGGGGGGYGGGGGGYGGGGRGGGRGGGGGGCYNCGESGHMARECTSGGGGGGGRYGGGGGGGGGGGGGGSCYSCGESGHFARDCPTGSAR* 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2252 208 ProSiteProfiles Cold-shock (CSD) domain profile. 5 71 IPR002059 GO:0003676
Mtr4g2252 208 Gene3D - 2 83 IPR012340 -
Mtr4g2252 208 PRINTS Cold shock protein signature 8 23 IPR002059 GO:0003676
Mtr4g2252 208 PRINTS Cold shock protein signature 29 38 IPR002059 GO:0003676
Mtr4g2252 208 PRINTS Cold shock protein signature 44 62 IPR002059 GO:0003676
Mtr4g2252 208 SUPERFAMILY Nucleic acid-binding proteins 5 71 IPR012340 -
Mtr4g2252 208 PANTHER COLD SHOCK PROTEIN 2 1 205 - -
Mtr4g2252 208 MobiDBLite consensus disorder prediction 61 75 - -
Mtr4g2252 208 ProSiteProfiles Zinc finger CCHC-type profile. 189 203 IPR001878 GO:0003676|GO:0008270
Mtr4g2252 208 SMART csp_8 7 72 IPR011129 GO:0003676
Mtr4g2252 208 Gene3D - 138 171 - -
Mtr4g2252 208 Gene3D - 184 208 - -
Mtr4g2252 208 CDD CSP_CDS 7 71 IPR002059 GO:0003676
Mtr4g2252 208 SMART c2hcfinal6 148 164 IPR001878 GO:0003676|GO:0008270
Mtr4g2252 208 SMART c2hcfinal6 188 204 IPR001878 GO:0003676|GO:0008270
Mtr4g2252 208 Pfam Zinc knuckle 188 203 IPR001878 GO:0003676|GO:0008270
Mtr4g2252 208 Pfam Zinc knuckle 148 164 IPR001878 GO:0003676|GO:0008270
Mtr4g2252 208 SUPERFAMILY Retrovirus zinc finger-like domains 141 205 IPR036875 GO:0003676|GO:0008270
Mtr4g2252 208 Pfam 'Cold-shock' DNA-binding domain 7 71 IPR002059 GO:0003676
Mtr4g2252 208 MobiDBLite consensus disorder prediction 51 88 - -
Mtr4g2252 208 ProSitePatterns Cold-shock (CSD) domain signature. 19 38 IPR019844 -
Mtr4g2252 208 ProSiteProfiles Zinc finger CCHC-type profile. 149 164 IPR001878 GO:0003676|GO:0008270
Mtr4g2252 208 PANTHER COLD SHOCK DOMAIN PROTEIN 2 1 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2252 Mtr-Chr4 35997011 35997911 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Mtr4g2252 CSD 2.2e-27 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2252 - - qlo:115969597 154.451