Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2245 ATGCGTAGAGAGATCGCGTTTCTCGCTCAGCCTCGATTCCTCATTCTCCTCCTTGTTCTCTCAATTTTCATTATTTTCGCATTCTCTTCTTCTAAACTGGCCGATGAGAAAACAGAAGAGGAGCCTGAAATTACGCATAGAGTTTTCTTGGATATTGATATTGATAAACAGCGTTTAGGTAGGATCGTGATTGGATTATATGGCCAAGTGGTACCAAAAACTGTGGAAAATTTTAGAGCTTTGTGCACAGGGGAGAAAGGCGAGAGTGCAAGTGGTGTAAAACTTCATTATAAAGGAACACCTTTTCATCGGATAGTATCTGGTTTTGTGATTCAGGGTGGTGATATTGTTCATCGTGATGGCAAAGCATCCGAATCTATTTACGGTGGCACCTTTCCAGACGAGAATTTCAGGATTAAACATTCTCATGCTGGCGTTGTCTCTATGGCTAATTCAGGACCTGATTCCAATGGTTCACAGTTTTTCTTTACCACAGTGAAGGCCAGTTGGTTGGATGGAGACCATGTTGTTTTTGGCAAGGTTGTTCAAGGGATGGATACCGTGTTTGCAATTGAAGGGGGGGCTGGAACCTATAGTGGGAAACCAAGGAAGAAGGTAGTAATTGCGGACTCTGGAGAGATACCGAAGAGCAAGTGGGACGAGGAAAGTTGA 672 0.433 MRREIAFLAQPRFLILLLVLSIFIIFAFSSSKLADEKTEEEPEITHRVFLDIDIDKQRLGRIVIGLYGQVVPKTVENFRALCTGEKGESASGVKLHYKGTPFHRIVSGFVIQGGDIVHRDGKASESIYGGTFPDENFRIKHSHAGVVSMANSGPDSNGSQFFFTTVKASWLDGDHVVFGKVVQGMDTVFAIEGGAGTYSGKPRKKVVIADSGEIPKSKWDEES* 224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2245 223 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 52 211 IPR002130 GO:0000413|GO:0003755
Mtr4g2245 223 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 20 223 - -
Mtr4g2245 223 SUPERFAMILY Cyclophilin-like 44 214 IPR029000 -
Mtr4g2245 223 Gene3D - 33 220 IPR029000 -
Mtr4g2245 223 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 66 81 IPR002130 GO:0000413|GO:0003755
Mtr4g2245 223 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 102 114 IPR002130 GO:0000413|GO:0003755
Mtr4g2245 223 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 145 160 IPR002130 GO:0000413|GO:0003755
Mtr4g2245 223 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 160 172 IPR002130 GO:0000413|GO:0003755
Mtr4g2245 223 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 173 188 IPR002130 GO:0000413|GO:0003755
Mtr4g2245 223 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 97 114 IPR020892 GO:0003755|GO:0006457
Mtr4g2245 223 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 49 213 IPR002130 GO:0000413|GO:0003755
Mtr4g2245 223 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 20 223 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2245 Mtr-Chr4 35900394 35904243 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g2245 60 211 U-box Gene Family AT5G67530 42.484 3.16e-27 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2245 - - gmx:100800775 372.859