Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2236 ATGGGAAGATCACCTTGTTGTGAAAAAGCTCATACAAACAAAGGAGCTTGGACAAAAGAAGAAGATGATAGACTTATATCATATATTAGGGCACATGGTGAAGGTTGTTGGAGATCTCTCCCTAAAGCAGCTGGCTTACTCCGATGTGGTAAAAGTTGTCGTCTCCGGTGGATTAACTATCTCAGGCCAGACCTTAAACGTGGTAACTTTACAGAAGAAGAAGATGAACTCATCATCAAACTCCATAGTCTTCTTGGTAACAAATGGTCTTTGATAGCTGGAAGATTACCAGGAAGAACAGATAATGAGATAAAGAATTATTGGAACACTCATATAAGAAGAAAGCTTTTGAATAGAGGAATTGACCCTGCTACTCATAGGCCTTTAAACGAAGTTTCTCATTCTCAATCACAATCTCAAACTCTTCATCTTCAAAATCAAGAAGCTGTTACTATAGCTGTAGCAGCATCTACATCAACTCCTACAGCTACAAAAACCCTACCAACAACTATATCTTTTGCATCATCCATTAAACAAGAACAATATCATCATCATCATCATCATCAAGAAATGAACACAAACATGGTTAAAGGGTTGGTGTTAGAACGTTGTCCTGATTTGAATCTTGAGTTAACAATTAGTCCACCACGTGTTCAAGAACATGATGAACAATTCAGAAACAGAGAAAGGAACAATCTCTGTTTTGTTTGTAGTTTGGGTTTGCAGAATAGTAAGGATTGTACCTGTGATGAAATTGTTGGAAATTCTAGCAGTGGAAATGGTTCCACTGCACCTGCTTATGATTTCTTGGGTTTGAAAGGTGGTGTTTGGGATTACAAAGGCTTAGAAATGAAATGA 858 0.3753 MGRSPCCEKAHTNKGAWTKEEDDRLISYIRAHGEGCWRSLPKAAGLLRCGKSCRLRWINYLRPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIRRKLLNRGIDPATHRPLNEVSHSQSQSQTLHLQNQEAVTIAVAASTSTPTATKTLPTTISFASSIKQEQYHHHHHHQEMNTNMVKGLVLERCPDLNLELTISPPRVQEHDEQFRNRERNNLCFVCSLGLQNSKDCTCDEIVGNSSSGNGSTAPAYDFLGLKGGVWDYKGLEMK* 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2236 285 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Mtr4g2236 285 CDD SANT 69 112 IPR001005 -
Mtr4g2236 285 CDD SANT 16 61 IPR001005 -
Mtr4g2236 285 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Mtr4g2236 285 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Mtr4g2236 285 Gene3D - 68 148 - -
Mtr4g2236 285 Gene3D - 14 66 - -
Mtr4g2236 285 SMART sant 66 114 IPR001005 -
Mtr4g2236 285 SMART sant 13 63 IPR001005 -
Mtr4g2236 285 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Mtr4g2236 285 PANTHER TRANSCRIPTION REPRESSOR MYB4 1 255 - -
Mtr4g2236 285 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 255 - -
Mtr4g2236 285 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Mtr4g2236 285 SUPERFAMILY Homeodomain-like 13 108 IPR009057 -
Mtr4g2236 285 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2236 Mtr-Chr4 35784651 35786218 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g2236 1 285 MYB Transcription Factor Family AT4G38620 59.933 6.50e-112 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mtr4g2236 Myb_DNA-binding 2.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2236 K09422 - gmx:780553 375.555
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g2236 4 35784651 35786218 Mtr4g2236 4 35784651 35786218 ECH