Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2200 ATGGGTTTCCGTTTAAATGTTATTCGACGGGCATCATTCACAGCTAGCCAAGCAGCTCTAAAATCAGCAGAAGTTCCAAAGGGCTATGTTGCAGTGTATGTTGGAGAGAAACAGAAGCGGTTTGTTGTCCCAATATCATACTTGAACCAACCATTGTTTCAAGAATTGCTACATCAAGCGGAAGAAGAATTTGGATATGATCATCCCATGGGTGGCCTCACCATTCCTTGCTCCGAAGATGTGTTCCAACATATAACTTCTTGCTTGAATGGGCTATGA 279 0.4265 MGFRLNVIRRASFTASQAALKSAEVPKGYVAVYVGEKQKRFVVPISYLNQPLFQELLHQAEEEFGYDHPMGGLTIPCSEDVFQHITSCLNGL* 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2200 92 Pfam Auxin responsive protein 12 89 IPR003676 GO:0009733
Mtr4g2200 92 PANTHER AUXIN-INDUCED PROTEIN 6B 1 90 - -
Mtr4g2200 92 PANTHER SAUR-LIKE AUXIN-RESPONSIVE PROTEIN FAMILY-RELATED 1 90 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2200 Mtr-Chr4 35455574 35456079 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g2200 14 91 Calmodulin-binding Proteins AT3G43120 44.872 2.59e-21 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2200 K14488 - gmx:106798972 160.999
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g2200 4 35455574 35456079 Mtr4g2200 4 35455574 35456079 ECH