Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2196 ATGGCTAAAACATATGAGCTGAGGCAAAAAACAAAACCAGATCTTCTGAATCAATTGAAGGATCTGAAAGCAGAACTTGCTCTCCTTCGCGTCGCGAAAGTCACCGGCGGTGCCCCTAATAAAATATCCAAAATCAAAGTTGTTCGGCTTAACATCGCACAGGTTTTGACAGTGATTTCACAGAACCAAAAGACAGCATTGAGGGCAGCGTATAAGCACAAAAAGTACTTGCCTTTGGATCTTCGTCCCAAAAAGACCAGAGCTATTAGAAGACGTCTCACTAAGAATCAGCTCTCTTTGAAGACAGACCGTGAGAAGAAGAAGGAAATCTACTTCCCATTGAGAAAGTATGCCATTAAAGCGTAA 366 0.4208 MAKTYELRQKTKPDLLNQLKDLKAELALLRVAKVTGGAPNKISKIKVVRLNIAQVLTVISQNQKTALRAAYKHKKYLPLDLRPKKTRAIRRRLTKNQLSLKTDREKKKEIYFPLRKYAIKA* 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2196 121 Gene3D - 1 75 IPR036049 GO:0003735|GO:0005840|GO:0006412
Mtr4g2196 121 CDD Ribosomal_L29_HIP 6 61 - -
Mtr4g2196 121 Pfam Ribosomal L29 protein 6 61 IPR001854 GO:0003735|GO:0005840|GO:0006412
Mtr4g2196 121 TIGRFAM L29: ribosomal protein uL29 6 61 IPR001854 GO:0003735|GO:0005840|GO:0006412
Mtr4g2196 121 SUPERFAMILY Ribosomal protein L29 (L29p) 2 62 IPR036049 GO:0003735|GO:0005840|GO:0006412
Mtr4g2196 121 Coils Coil 12 32 - -
Mtr4g2196 121 Hamap 50S ribosomal protein L29 [rpmC]. 1 62 IPR001854 GO:0003735|GO:0005840|GO:0006412
Mtr4g2196 121 PANTHER 60S RIBOSOMAL PROTEIN L35-LIKE 3 120 - -
Mtr4g2196 121 PANTHER 60S RIBOSOMAL PROTEIN L35 3 120 IPR045059 GO:0000463|GO:0022625
Mtr4g2196 121 Gene3D - 76 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2196 Mtr-Chr4 35431319 35435367 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g2196 3 120 Cytoplasmic Ribosomal Protein Gene Family AT3G09500 82.203 5.25e-64 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2196 K02918 - gmx:100305671 207.223
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g2196 4 35431319 35435367 Mtr4g2196 4 35431319 35435367 ECH