Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2176 ATGGAAGATACTGAAGCAGCTTCATCTTTCAAAATGAACAATCATATGGAACAATTAACCATACCACAGTTTAATGCATCATCACAATCACAAATGCGAACTGTTACTAGAAATCATCATCATAATCAAAGAGGAGGTGGTATACCACCATCTCACCCACACCAGATCCCACCTATTTCACCTTACTCTCACATGAACAATCAGATCCCGGTTTCACGGCCGCAAATGCCGTCGCACAGTACAAGTCCTACACCTTCCCACACACGATCACTCTCTCAACCCTCTTTTTTCTCTCTCGACTCTCTTCCACCTCTCAGCCCTTGCACGTTTCGCGAATCTTCCTCCACGTCGGATCATGCTGACGTGTCCATGGAAGATCGTGACGTCACTTCTCATTCTCCGTTACCTCCGTTTGCTGCTAGAAACCCTTCTTTACCGCCGAGAAAATCTCACCGGCGTTCTAACAGTGATATTCCGTTTGGATTTTCTACTGTTTTGCAGTCTTCGCCGCCGTTGATTCCGCTGAGAGGAAGGGAAGGTGTTAAACCTAATTCTTCTGTGGTGAAAAGGGAAACGAATTGGGAACATGGTAATGTAGAGGAGAAGAAATCGTTGTCGCCGGAAGGTGAAGTTGTGGATGATCTTTTTTCTGCTTATATGAATTTGGATAACATTGATGCAATTAACGATGATAAAAACGCGGCTACTGATGATAGTAGAGCGAGTGGGACGAAGACTAATGGTGGTGATAGTAGTGATAATGAAGCTGAAAGTAGTGTTAATGAGAGTGGGGATAGTATGCAGAGGAGGGAAGGGAATAAGAGAAGTGCAGGAGGTGATATTGCACCGACTACGAGACACTATAGGAGTGTTTCGATGGATAGTTTTATTGGGAAGTTGAATTTCAATGATGAGTCTTTGAAGATGCCGCCTTCCCCTGGAGGGTTGATGTCGCCTGGTAATTCGGGGGATGGGAATAATGCGGCTTTTAGTTTGGAGTTTGGGAATGGTGAGTTTAGTGGGCCAGAGTTGAAGAAAATTATGGCTAATGAGAAACTTGCTGAGATTGCTATGGCTGATCCGAAGCGGGCTAAGAGGATTTTGGCTAATAGGCAATCGGCTGCGCGTTCCAAAGAGCGCAAAATGCGATATATTTCGGAGCTAGAACACAAGGTTCAGACTCTGCAGACTGAAGCCACTACACTTTCTGCACAACTTACTTTGTTGCAGAGAGATTCAGTTGGACTCACTAACCAGAATAGTGAGTTGAAGTTCCGCCTTCAATCCATGGAACAGCAGGCAAAACTCCGAGATGCTCTGAATGAGGCGCTTACTGCCGAGGTTCAAAGACTGAAGATTGTTACAGCTGAGCTGAATGGGGAGTCACTTCCTTCTAACTGCATGATTCCGCAACATTCTGTCAACCCTATGATGTTCCAACAACAGCATCAGCATCAGCAGCATCAACAACAACAGCAGCAGAATGGTAATGCCAACTCAAAGAATGAGTTAAAGCAATAG 1521 0.449 MEDTEAASSFKMNNHMEQLTIPQFNASSQSQMRTVTRNHHHNQRGGGIPPSHPHQIPPISPYSHMNNQIPVSRPQMPSHSTSPTPSHTRSLSQPSFFSLDSLPPLSPCTFRESSSTSDHADVSMEDRDVTSHSPLPPFAARNPSLPPRKSHRRSNSDIPFGFSTVLQSSPPLIPLRGREGVKPNSSVVKRETNWEHGNVEEKKSLSPEGEVVDDLFSAYMNLDNIDAINDDKNAATDDSRASGTKTNGGDSSDNEAESSVNESGDSMQRREGNKRSAGGDIAPTTRHYRSVSMDSFIGKLNFNDESLKMPPSPGGLMSPGNSGDGNNAAFSLEFGNGEFSGPELKKIMANEKLAEIAMADPKRAKRILANRQSAARSKERKMRYISELEHKVQTLQTEATTLSAQLTLLQRDSVGLTNQNSELKFRLQSMEQQAKLRDALNEALTAEVQRLKIVTAELNGESLPSNCMIPQHSVNPMMFQQQHQHQQHQQQQQQNGNANSKNELKQ* 507
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2176 506 Coils Coil 488 506 - -
Mtr4g2176 506 SMART brlzneu 358 422 IPR004827 GO:0003700|GO:0006355
Mtr4g2176 506 MobiDBLite consensus disorder prediction 478 506 - -
Mtr4g2176 506 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 91 505 - -
Mtr4g2176 506 MobiDBLite consensus disorder prediction 1 207 - -
Mtr4g2176 506 MobiDBLite consensus disorder prediction 239 266 - -
Mtr4g2176 506 MobiDBLite consensus disorder prediction 156 170 - -
Mtr4g2176 506 CDD bZIP_plant_RF2 363 412 IPR044759 GO:0003700|GO:0006355
Mtr4g2176 506 SUPERFAMILY Leucine zipper domain 362 413 IPR046347 GO:0003700|GO:0006355
Mtr4g2176 506 Pfam bZIP transcription factor 362 416 IPR004827 GO:0003700|GO:0006355
Mtr4g2176 506 Coils Coil 441 461 - -
Mtr4g2176 506 MobiDBLite consensus disorder prediction 7 36 - -
Mtr4g2176 506 MobiDBLite consensus disorder prediction 230 287 - -
Mtr4g2176 506 Gene3D - 361 413 - -
Mtr4g2176 506 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 360 423 IPR004827 GO:0003700|GO:0006355
Mtr4g2176 506 Coils Coil 378 412 - -
Mtr4g2176 506 MobiDBLite consensus disorder prediction 60 117 - -
Mtr4g2176 506 MobiDBLite consensus disorder prediction 193 207 - -
Mtr4g2176 506 PANTHER BASIC-LEUCINE ZIPPER (BZIP) TRANSCRIPTION FACTOR FAMILY PROTEIN 91 505 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2176 Mtr-Chr4 35325407 35329397 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g2176 47 481 bZIP Transcription Factor Family AT4G38900 59.420 1.71e-153 447
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Mtr4g2176 bZIP_1 5.5e-09 CL0018
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g2176 4 35325407 35329397 Mtr4g2176 4 35325407 35329397 ECH