Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2149 ATGAAGATCCAGTGTGATGCATGTCACAAACAAGAGGCCTCCTTGTTTTGCCCTGCAGATGAAGCAGCTCTCTGCAATCAATGTGATCGCAATATCCACTATGCCAACAAGGTCTCTGCTAAACACAAACGCTTCACTCTTCACCACCCCACTTCCAAAGACACCCCTCTCTGTGATATCTGCAAGGAGAGGCGTGCATATCTATTTTGCAAAGAAGACAGAGCAATACTTTGCAGGGAATGTGACATTCCTATCCATGAAATCAACAAACTTACCAAGCAACACAACAGGTTTCTTCTCACAGGCGTAAAGATCGGTGCTTCTTCTTCTTGTTCAAATCCAACAATTTCCAATGGCTCAGAACTAAGAACCTCAAGTCCAAGACCAAGTTCATTTTCAAGTGAAAATAATAGTTGTTCTCAAAGTTCATTCAAAGAGAACATGGTTTGTGACACAGTTTCAACCAGTAGCATTTCCGAATACTTGATTGAAACGATTCCTGGTTACTGCATGGAGGACCTTTTTGATGCTTCTTTTGCACCTAATAACGTTTTCTGTAATAAGGATTATTATGAACAGAACCAAGATCTTCAAGTTATAAACATGTCTGACTGGGTACCACAATCTCAAGTTAGATTCCCTCAGCTTAGTGCTAATTCGAATGTTCCCAATTGA 675 0.4059 MKIQCDACHKQEASLFCPADEAALCNQCDRNIHYANKVSAKHKRFTLHHPTSKDTPLCDICKERRAYLFCKEDRAILCRECDIPIHEINKLTKQHNRFLLTGVKIGASSSCSNPTISNGSELRTSSPRPSSFSSENNSCSQSSFKENMVCDTVSTSSISEYLIETIPGYCMEDLFDASFAPNNVFCNKDYYEQNQDLQVINMSDWVPQSQVRFPQLSANSNVPN* 225
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2149 224 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
Mtr4g2149 224 Gene3D Classic Zinc Finger 1 95 - -
Mtr4g2149 224 MobiDBLite consensus disorder prediction 110 141 - -
Mtr4g2149 224 Pfam B-box zinc finger 4 44 IPR000315 GO:0008270
Mtr4g2149 224 Pfam B-box zinc finger 56 96 IPR000315 GO:0008270
Mtr4g2149 224 CDD Bbox1_BBX-like 57 100 - -
Mtr4g2149 224 SMART bboxneu5 53 100 IPR000315 GO:0008270
Mtr4g2149 224 SMART bboxneu5 4 47 IPR000315 GO:0008270
Mtr4g2149 224 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 207 - -
Mtr4g2149 224 CDD Bbox1_BBX-like 5 47 - -
Mtr4g2149 224 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Mtr4g2149 224 PANTHER B-BOX ZINC FINGER PROTEIN 20 1 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2149 Mtr-Chr4 34978832 34980714 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g2149 1 176 C2C2-CO-like Transcription Factor Family AT4G39070 52.736 3.58e-59 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Mtr4g2149 zf-B_box 1.9e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2149 - - gmx:100790232 271.166
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g2149 4 34978832 34980714 Mtr4g2149 4 34978832 34980714 ECH
Mtr4g2149 4 34978832 34980714 Mtr5g0851 5 8372370 8375326 ECH