Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2109 ATGTTACATTGTCTTAACACTTCAGGAAATCTAGTAGGAGGAATCATTTCCGACATGACAGTGTTGGAAAGACAAAGAGCAAGGAAGAAGTTCCAACATGAACATGAACAAGATCAACAATTTTTTATGGTTGGTTGTGATTCTGCTCTTGGTGAGGTTGTAGCTAACTCTATGAAACCCGGGGACCTGGGTTTCGAAAACGTCGAAGAAACTGTCAAGAAAAGGAAAGCTGATCACAAGGTGGATATGAAGTCCAAAGACAAGAGGATCAAAGTGAGTGTTGAAGAAGGTGAATCCAAAATCACGGAGCAAATAAAGGGAAATAAGAATACAAAGTTGAAAAATAGAGAAAATTGTGATGATGTTGGTTCCAAGGAAAATTCAAAAGGTTCAGAGATTCAAAATCATAAGCCTGATTACATTCATGTTCGAGCACGTCGTGGTCAAGCTACTGATAGTCATAGCTTAGCTGAAAGAGTTAGAAGGGAAAAAATAAGCGAAAGGATGAAGTATTTGCAAGATTTAGTACCAGGATGCAACAAAATTGCAGGCAAAGCTGGAATGCTTGATGAAATTATTAACTATGTTCAGTCTCTTCAAAGACAAGTCGAGTTCTTGTCAATGAAATTAGCAGCTGTAAACCCAAGACTTGACTTCAACATTGATGAATTGTTTGCCAAAGAGGTGTTTACTCAAAATTTTCAAATGATGCAATCGGAAATGTCTAACCCTGCATATCTTCAATTCAATTCAGCACAACAACAAGTTTCATGTTGTGGTGGATTGATAAACAATATGGGGATACTCCCTCCGGAAATTGGGGTTCGAAGGAACATTAATGCACCGGCATCTGCATCTTTACCTGAAATCTTTCTCGACCCATCATGTTTCACTCATATCCTACCATCCTCAACTTGGGAAGGTGATTTTCAAAATCTTCATAGTGTAGATTTTGATCAAGGACGATCAACATCATTTCCTTCTCAACCATTTACAGGCATGATTGAAGCTAGCAATCTGAAGATGGAGATGTAA 1035 0.3816 MLHCLNTSGNLVGGIISDMTVLERQRARKKFQHEHEQDQQFFMVGCDSALGEVVANSMKPGDLGFENVEETVKKRKADHKVDMKSKDKRIKVSVEEGESKITEQIKGNKNTKLKNRENCDDVGSKENSKGSEIQNHKPDYIHVRARRGQATDSHSLAERVRREKISERMKYLQDLVPGCNKIAGKAGMLDEIINYVQSLQRQVEFLSMKLAAVNPRLDFNIDELFAKEVFTQNFQMMQSEMSNPAYLQFNSAQQQVSCCGGLINNMGILPPEIGVRRNINAPASASLPEIFLDPSCFTHILPSSTWEGDFQNLHSVDFDQGRSTSFPSQPFTGMIEASNLKMEM* 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2109 344 Gene3D - 146 220 IPR036638 GO:0046983
Mtr4g2109 344 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 70 324 IPR024097 GO:0006355
Mtr4g2109 344 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 147 218 IPR036638 GO:0046983
Mtr4g2109 344 SMART finulus 155 205 IPR011598 GO:0046983
Mtr4g2109 344 MobiDBLite consensus disorder prediction 107 136 - -
Mtr4g2109 344 Pfam Helix-loop-helix DNA-binding domain 153 200 IPR011598 GO:0046983
Mtr4g2109 344 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 149 199 IPR011598 GO:0046983
Mtr4g2109 344 PANTHER TRANSCRIPTION FACTOR BHLH63-LIKE 70 324 - -
Mtr4g2109 344 Coils Coil 337 344 - -
Mtr4g2109 344 CDD bHLH_AtBPE_like 139 224 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2109 Mtr-Chr4 34616591 34618977 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g2109 18 314 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G34530 42.342 5.38e-59 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mtr4g2109 HLH 3e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2109 - - gmx:100794256 413.305
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g2109 4 34616591 34618977 Mtr4g2109 4 34616591 34618977 ECH
Mtr4g2109 4 34616591 34618977 Mtr5g0769 5 7562549 7565289 ECH