Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2103 ATGGCTTCTGCAGATGTTGAATACCGTTGCTTCGTCGGAGGTCTTGCATGGGCCACCGATAGCGAAGCTCTCGAGAAAGCCTTCTCTCAATATGGAGAAATCATCGATTCGAAGATTATCAATGATCGTGAAACTGGAAGATCCAGAGGTTTTGGATTTGTGACATTTGCTGATGAGAAATCGATGAGAGATGCTATTGAAGGGATGAACGGTCAGGATATGGATGGAAGGAACATTACTGTTAATGAGGCTCAGAGCCGTGGTAGTGGTGGTGGAGGAGGCCGTGGTGGCGGTGGATACGGTGGTGGTGGTGGTGGATATGGCGGTGGTGGTCGCCGTGAGGGTGGTTACAACAGAAGCAGTGGTGGTGGAGGTGGTTATGGAGGAGGAGGTGGTGGTGGTTATGGTGGTGGTAGGGACCGTGGTTATGGTGATGATGGTGGTTCCCGCTATTCACGCGGTGGTGGTGGTGATGGAGGAAGCTGGAGAAGTTAG 495 0.5172 MASADVEYRCFVGGLAWATDSEALEKAFSQYGEIIDSKIINDRETGRSRGFGFVTFADEKSMRDAIEGMNGQDMDGRNITVNEAQSRGSGGGGGRGGGGYGGGGGGYGGGGRREGGYNRSSGGGGGYGGGGGGGYGGGRDRGYGDDGGSRYSRGGGGDGGSWRS* 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2103 164 MobiDBLite consensus disorder prediction 68 164 - -
Mtr4g2103 164 SUPERFAMILY RNA-binding domain, RBD 8 116 IPR035979 GO:0003676
Mtr4g2103 164 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 86 IPR000504 GO:0003723
Mtr4g2103 164 Gene3D - 2 128 IPR012677 -
Mtr4g2103 164 SMART rrm1_1 9 82 IPR000504 GO:0003723
Mtr4g2103 164 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 79 IPR000504 GO:0003723
Mtr4g2103 164 PANTHER GEO13361P1-RELATED 1 163 - -
Mtr4g2103 164 PANTHER RNA-BINDING PROTEIN GRP1A, PUTATIVE, EXPRESSED-RELATED 1 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2103 Mtr-Chr4 34552080 34553168 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g2103 10 88 Eukaryotic Initiation Factors Gene Family AT2G23350 34.177 2.27e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2103 - K13195 ccaj:109800369 158.303
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g2103 4 34552080 34553168 Mtr4g2103 4 34552080 34553168 ECH