Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2102 ATGGGTTCTTCTGATGTTGAGTACCGTTGCTTCGTCGGAGGTCTTGCATGGGCCACCGATAGCCAAGCTCTCGAGCAAGCTTTCTCTAAGTTTGGTGAAATCACTGATTCCAAGGTGATTAACGATCGTGAAACTGGACGATCAAGAGGTTTTGGTTTTGTGACATTCGCTGAGGAGAAATCGATGAGAGATGCAATTGAGGAGATGAACGGTCAGGATATTGACGGCAGGAATATTACTGTGAATGAAGCTCAGTCCCGTGGTAGTGGTGGAGGAGGTAGAGGTGGTGGCGGCGGTGGTTATGGTGGCGGCGGTGGTTATGGAGGAGGCGGTGGTGGATATGGAGGAGGCGGTGGTCGTCGTGATGGTGGATACAGCAGAAGCGGTGGTGGTGGAGGCTATGGGGGAGGAGGCGATCGTGGATATGGTGGTGGAGGTGGTGGTGGTTATGGTGGAGGTAGGGACCGTGGATATGGAGGTGGAGGTGGTGACCGTGGTTATGGTGGTGGAGGTGGCGGTGATCGCTACTCTCGTGGTGGTGGTGCTGATAGCGGTGGAAACTGGAGGGATTAG 573 0.5428 MGSSDVEYRCFVGGLAWATDSQALEQAFSKFGEITDSKVINDRETGRSRGFGFVTFAEEKSMRDAIEEMNGQDIDGRNITVNEAQSRGSGGGGRGGGGGGYGGGGGYGGGGGGYGGGGGRRDGGYSRSGGGGGYGGGGDRGYGGGGGGGYGGGRDRGYGGGGGDRGYGGGGGGDRYSRGGGADSGGNWRD* 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2102 190 PANTHER RNA-BINDING PROTEIN GRP1A, PUTATIVE, EXPRESSED-RELATED 1 128 - -
Mtr4g2102 190 SUPERFAMILY RNA-binding domain, RBD 8 118 IPR035979 GO:0003676
Mtr4g2102 190 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 11 79 IPR000504 GO:0003723
Mtr4g2102 190 PANTHER GEO13361P1-RELATED 1 128 - -
Mtr4g2102 190 MobiDBLite consensus disorder prediction 75 190 - -
Mtr4g2102 190 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 8 86 IPR000504 GO:0003723
Mtr4g2102 190 Gene3D - 2 107 IPR012677 -
Mtr4g2102 190 SMART rrm1_1 9 82 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2102 Mtr-Chr4 34534859 34535997 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g2102 10 81 Eukaryotic Initiation Factors Gene Family AT2G23350 41.667 2.56e-10 57.0