LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Mtr4g2100	ATGTTAAATAAAACCTTTAATCTAATCTTTTTTCATGTTCTTTACTTTTACAGGGTCGGAGAAGTCAACAACAATGGTGTGCATACCTTTCTCAACAAACTCTCCAATGCTGCCCCTGATACCAAGATCAAAGTTAGGGTAGCACGCATGTGGGACACGCTGAATATAACAAAAAAAAAGGAAATAATTAGTACAGATATGGTGCTAATTGATGAGAAGGCAAATTGCATTCATGCTACAATACCAAGGAGGTTCTCACCTTCATTGAAGAAAGTCTTGCAAGAAGGCAAGATATATGTAATTTCACACTTTGAGGTCTCAAAAAACAAGGAGAAATATGCTGTGGTTGAAAACAATCCCTCCATGCTTAGTTTCTATGGTGACGCAATTGTGACTGAGGAGGGCTCGGATGACAACACAATCCCTCGCTATATCTTTGAATTTGTTAATTTCAATGATCTTATCAAACGTTGCGGGAAAGAGGTGTTGGCAGATGTAATTGGATTTATAATTGATGTGGATCCAATTGAGGAGAAAACAACCGTCAATGGGAAAGTCGACATGTTGTCACTTCATTTGGGGGATGGCAGTGGGAATGTCTTGAAGGTAACGCTATGGGATGACTATGCTCCGATGTTTAATCAAAAACTGATAGATCAAATGCATGCTACTCCTAAGCCAAATGTGGCAATTTTTACCTCCACTTTGGTAAAACAATACCAAGGTGAGCTTTATGTTTCGTCTTCAAGATCCACAACAATTTATATCAACATAGACACCCCTGAAGTTGCTGATCTAATTTTGTCGTCCAAGGGGAAAAACAGTGTTCTGAAAACAACTGAAACTTTGTCTTTAACTAATGTTGATGTGAAGACCATATCTGAGCTTTTATCCATGGCAGTTTCGGGAGTTTATCAGGGTGATGTTGTCTACAATTGTGTTGCAACAGTTGATGACATCCTGCTAAAAAATGGGTTGTATTATGTTTCTTGCCCTCATTGTAGGAAAACTGTGAGTTCCACTGAGACAGACTTCAATTGTGAGCATTGTACTAAAAAGGTCGACTATCCAAAGATTAGGTACCGTTTGGAACTTCAAGTCAACGACTCTACGGAATCAACAATATTTGTGTTGTTTGCCGAAGTTGCTGAACAATTGGCACAACTAAAGCTAGATGACCTCACCCCGGATTTAGAAAATCAGACTGGACGTGACTCTGATCTGCCTAAACAGCTCCAGCATATCATTGGTTCAAAGCATATTTTTCAAGTTAAGCTGAGCTCTTACTTTGAACGTCGTGGAGTACAAAGCTTCACTGCACATAAGATTCTGAAGCCAGTTGTTAAGATTGAGAAAGAAGACAACATTGCCACTGCGTGTTCTTCCTCAAGTGGATCTCTTACCATTGAAATACCAGATTTGCCGAAGAAGAGGAGAAAATTAATATTGCACTCCAACAAATCAGGTGATAAGGACCAGAATGAAGATGTGGAAGATTTAGAAGATTGA	1509	0.3903	MLNKTFNLIFFHVLYFYRVGEVNNNGVHTFLNKLSNAAPDTKIKVRVARMWDTLNITKKKEIISTDMVLIDEKANCIHATIPRRFSPSLKKVLQEGKIYVISHFEVSKNKEKYAVVENNPSMLSFYGDAIVTEEGSDDNTIPRYIFEFVNFNDLIKRCGKEVLADVIGFIIDVDPIEEKTTVNGKVDMLSLHLGDGSGNVLKVTLWDDYAPMFNQKLIDQMHATPKPNVAIFTSTLVKQYQGELYVSSSRSTTIYINIDTPEVADLILSSKGKNSVLKTTETLSLTNVDVKTISELLSMAVSGVYQGDVVYNCVATVDDILLKNGLYYVSCPHCRKTVSSTETDFNCEHCTKKVDYPKIRYRLELQVNDSTESTIFVLFAEVAEQLAQLKLDDLTPDLENQTGRDSDLPKQLQHIIGSKHIFQVKLSSYFERRGVQSFTAHKILKPVVKIEKEDNIATACSSSSGSLTIEIPDLPKKRRKLILHSNKSGDKDQNEDVEDLED*	503

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Mtr4g2100	502	SUPERFAMILY	Nucleic acid-binding proteins	288	427	IPR012340	-
	Mtr4g2100	502	SUPERFAMILY	Nucleic acid-binding proteins	29	134	IPR012340	-
	Mtr4g2100	502	Gene3D	-	140	279	IPR012340	-
	Mtr4g2100	502	SUPERFAMILY	Nucleic acid-binding proteins	146	266	IPR012340	-
	Mtr4g2100	502	CDD	RPA1_DBD_C	290	454	IPR013955	-
	Mtr4g2100	502	Gene3D	-	28	133	IPR012340	-
	Mtr4g2100	502	CDD	RPA1_DBD_A_like	42	131	-	-
	Mtr4g2100	502	PANTHER	BNAC01G35430D PROTEIN	40	463	-	-
	Mtr4g2100	502	CDD	RPA1_DBD_B_like	165	271	-	-
	Mtr4g2100	502	Pfam	Replication protein A OB domain	156	257	IPR031657	-
	Mtr4g2100	502	Pfam	Domain of unknown function DUF223	67	133	IPR003871	-
	Mtr4g2100	502	Gene3D	-	280	458	IPR012340	-
	Mtr4g2100	502	Pfam	Replication factor-A C terminal domain	312	427	IPR013955	-
	Mtr4g2100	502	MobiDBLite	consensus disorder prediction	482	502	-	-
	Mtr4g2100	502	PANTHER	REPLICATION FACTOR A 1, RFA1	40	463	IPR004591	GO:0003677\|GO:0005634\|GO:0006260\|GO:0006281\|GO:0006310

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Mtr4g2100	Mtr-Chr4	34508979	34513659	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Mtr4g2100	69	427	Core DNA Replication Machinery Family	AT5G08020	26.933	2.62e-24	104

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Mtr4g2100	-		-	mtr:MTR_4g070090	948.732