Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2099 ATGGCTGATGTTGAATACCGGTGCTTCGTCGGAGGTCTTGCATGGGCCACCGACAACGAAGCTCTCGAGAAAGCCTTCTCTCAATACGGCGAGATCGTTGATTCCAAGATCATTAACGATCGTGAAACTGGACGATCAAGAGGTTTTGGATTTGTGACATTCGCTAACGAGAAATCCATGAACGATGCCATTGAAGCAATGAACGGTCAGGATTTGGACGGACGTAACATCACTGTGAACCAAGCTCAGAGCCGTGGTAGCGGTGGAGGTGGAGGAGGAGGCCGTGGTGGCGGTGGTTATGGAGGTGGTGGCGGTGGATATGGTGGAGAACGTCGTGGTTACGGTGGAGGTGGTGGATACGGAGGAGGAGGTGGTGGTGGATATGGAGAACGCCGTGGTGGAGGCGGTGGCTACAGCAGAGGAGGTGGTGGTGGAGGATATGGTGGTGGTGGATACAGCAGAGGTGGAGGTGATGGTGGTTATTAG 486 0.5412 MADVEYRCFVGGLAWATDNEALEKAFSQYGEIVDSKIINDRETGRSRGFGFVTFANEKSMNDAIEAMNGQDLDGRNITVNQAQSRGSGGGGGGGRGGGGYGGGGGGYGGERRGYGGGGGYGGGGGGGYGERRGGGGGYSRGGGGGGYGGGGYSRGGGDGGY* 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2099 161 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 84 IPR000504 GO:0003723
Mtr4g2099 161 PANTHER RNA-BINDING PROTEIN GRP1A, PUTATIVE, EXPRESSED-RELATED 2 132 - -
Mtr4g2099 161 Gene3D - 2 101 IPR012677 -
Mtr4g2099 161 SMART rrm1_1 7 80 IPR000504 GO:0003723
Mtr4g2099 161 MobiDBLite consensus disorder prediction 80 161 - -
Mtr4g2099 161 PANTHER GEO13361P1-RELATED 2 132 - -
Mtr4g2099 161 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 9 77 IPR000504 GO:0003723
Mtr4g2099 161 SUPERFAMILY RNA-binding domain, RBD 6 116 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2099 Mtr-Chr4 34507775 34508850 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g2099 8 86 Eukaryotic Initiation Factors Gene Family AT4G34110 36.709 1.32e-08 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2099 - K13195 thj:104824824 151.754