Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2098 ATGCTTCTTTCATATCAAAAACACACTCTTTACCTCCCTCATTCTTCTATCCACACCCCCAAAAACCCAAAACTCACCACTATCGTCAACTGCCAAAACCCAAACGAACAACACCAAAACCAACCAATTCCCAGAAGACACAATGCAAAATCAACATCATTTCTCATTCACCACCTTACACAAAAAAACACCAACACTAATCCTTCACCAACCTCACTACAAGACCCAACACCCCACGAAGAAAAAATCAAACTTTTAGAACTTTCCTTAGTAAGAAAAAGAACCCCACAATTTCCAGGTTCAATTTACGCTCAATCTCCAAGTGACCCTGATGTGGGTTCTTCTCTTCCTCCTCTGAGTACCCTTTTTCGGCGTGATGAAGAAGAAGAGGAAATGATTATGCAAGCTATTGAAATTCGTAGGAAGGTTACTGAAGAGGTTTTTAAAGAAGCAATGCGGAAGGGTAAATTTGGAATTACTTATACTGGTAATTTGGTTGATAGGTTGGGTGATTTTATTGATTATGTTATGATTGAAGCTGCTAATTTGAAAAGATTGCCGGAATATTCAAATTCGACTTTTAATTTAAGGGCTAAAACTGTTATTGAAGATTCTCAAGTTGTGCCACTTATCAGATGGTTGAAGCATAATTCTCTATCGTATCCTCAGATAGCTAAGCTCATTTTGATGTCAAGAGGGAAGCTTGAGTCTATAAGGAACCGTGTTGAGTGGTTGAAGTCGGTGCTCGTTAAGGGAGAGTTTATTGGGGATGCAATGTTAAAGAGTGGAGATAATGTTTTGCTGCGGAGTGACGGGGAGTTGGATGAGATTGTTGATTATTTAGAGTTTAATGGAGTCAGGAGGGAATGGATGGGTTATGTTGTGAGTCGGTGTCCGAAGTTGTTATCTTATAGCTTGGAAGAGGTGAAAACTCGTGTGCAGTTCTATCTGGATATGGGTTTAGATGCGAAGGATTTTGGCACCATGGTTTTTGATTTTCCTAAAGCTCTCGGTCACTATACTTTGGAAGAAATGAACCGAAAGGTTGATTACTTGAAAGAATTCGGGCTTGAAAGTAAAGATGTTGGTAAGCTGCTTGCATTTCGGCCACAATTGATGGCGTGCAGCATTGAAGAACAATGGAAACCCCTTGTTAAATATCTGTACTATTATGGGATTACCCGAGATGGGATGAGGAGAATGCTTACAATTAAACCAATGGTCTTTTGTGTTGACTTGGAGATGACTATTGTGCCAAAGGTAAAGTTTTTTCAGGACCTAGGGGTTCGAAATGACGGGATTGCCAAGATGCTTGTAAAATTTCCCACTCTACTCACTTACAGCCTTTACAAGAAGATTAGGCCTGTGGTCATATTCTTGATGACCAAGGCTGGAGTCACTGAAGAAAATATTCCAAAGGTTATAGCTCTTGGACCTGAGCTCTTGGGATGCAGCATAGTACATAAGCTTGAAGGAAATGTAAAGTATTATTTGTCTCTCGGCATACGTCTTCAGCAACTGGGTGAAATGATTGCTGATTTCCCAATGCTGCTCAGATACAATATAGACGTTCTTCGTCCTAAGTATACTTATTTGCGCAAAACCATGGTTCGAACTTTGAAAGATGCCATTGAGTTTCCGAGGTTTTTCAGCTATTCCCTCGAGGGTCGAATTATTCCAAGACACAAGGTTCTGGTGGAGAATCAGATTAATGTCAAGCTAAAATGCATGTTAGCTTGCACAGATGAAGAATTTAACAACATGGTCAAGAATATGATTAGAAAACGCCATAAACTTCAATCTACTGTCATGAAAGAGGATACTAAGCATCCCCAATCTACAGCCCAGACGTAA 1854 0.3991 MLLSYQKHTLYLPHSSIHTPKNPKLTTIVNCQNPNEQHQNQPIPRRHNAKSTSFLIHHLTQKNTNTNPSPTSLQDPTPHEEKIKLLELSLVRKRTPQFPGSIYAQSPSDPDVGSSLPPLSTLFRRDEEEEEMIMQAIEIRRKVTEEVFKEAMRKGKFGITYTGNLVDRLGDFIDYVMIEAANLKRLPEYSNSTFNLRAKTVIEDSQVVPLIRWLKHNSLSYPQIAKLILMSRGKLESIRNRVEWLKSVLVKGEFIGDAMLKSGDNVLLRSDGELDEIVDYLEFNGVRREWMGYVVSRCPKLLSYSLEEVKTRVQFYLDMGLDAKDFGTMVFDFPKALGHYTLEEMNRKVDYLKEFGLESKDVGKLLAFRPQLMACSIEEQWKPLVKYLYYYGITRDGMRRMLTIKPMVFCVDLEMTIVPKVKFFQDLGVRNDGIAKMLVKFPTLLTYSLYKKIRPVVIFLMTKAGVTEENIPKVIALGPELLGCSIVHKLEGNVKYYLSLGIRLQQLGEMIADFPMLLRYNIDVLRPKYTYLRKTMVRTLKDAIEFPRFFSYSLEGRIIPRHKVLVENQINVKLKCMLACTDEEFNNMVKNMIRKRHKLQSTVMKEDTKHPQSTAQT* 618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2098 617 Pfam mTERF 220 353 IPR003690 GO:0003690|GO:0006355
Mtr4g2098 617 Pfam mTERF 278 585 IPR003690 GO:0003690|GO:0006355
Mtr4g2098 617 Gene3D Transcription termination factor 3, mitochondrial 367 596 IPR038538 -
Mtr4g2098 617 PANTHER CGI-12 PROTEIN-RELATED 63 607 IPR003690 GO:0003690|GO:0006355
Mtr4g2098 617 SMART mt_12 472 503 IPR003690 GO:0003690|GO:0006355
Mtr4g2098 617 SMART mt_12 327 358 IPR003690 GO:0003690|GO:0006355
Mtr4g2098 617 SMART mt_12 292 322 IPR003690 GO:0003690|GO:0006355
Mtr4g2098 617 SMART mt_12 540 571 IPR003690 GO:0003690|GO:0006355
Mtr4g2098 617 SMART mt_12 435 467 IPR003690 GO:0003690|GO:0006355
Mtr4g2098 617 SMART mt_12 363 394 IPR003690 GO:0003690|GO:0006355
Mtr4g2098 617 SMART mt_12 399 430 IPR003690 GO:0003690|GO:0006355
Mtr4g2098 617 SMART mt_12 508 538 IPR003690 GO:0003690|GO:0006355
Mtr4g2098 617 PANTHER TRANSCRIPTION TERMINATION FACTOR MTERF2, CHLOROPLASTIC 63 607 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2098 Mtr-Chr4 34499113 34503568 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Mtr4g2098 mTERF 1.2e-66 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2098 K15032 - mnt:21401514 826.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g2098 4 34499113 34503568 Mtr4g2098 4 34499113 34503568 ECH