Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2060 ATGGGAGCCATGAGAGCAAATATGGTTTCTCACACCACTACCACAACCAACGATACACCAATGGTGCTTATACCATCACCTGCACGAGCTTCCACCAAAAAACGTAGGGGTAGACCCTTGGGGTCTAACAATAGACCCAAACCACCAATCAATATCAAGGAAGACACAAATACACATATGGAAATTGTTTGCATTGAGATCCCAACTGGAAGAAATATTATGGGGGCACTAGTCAAGTATGCTCGACGTCGTCAAGTCAACATGACAGTGTTGAGGGGTAATGGGTTTGTCTCTCATGTTACCCTTCTCCACCCAGAATCTCGCTCCCCAGTTATCCCCATGGAAGGACCATTTGAGATGACGTCTCTTTTTGGAATTCTTGAACTTATGCATTTTCTTTGCAATTTGGGTTTCAGAGTTGGGTGTTTTTGCTTCGTCACTGTGTTTCAAGGATTTAAAGATTTGGTCGTTTAA 474 0.4325 MGAMRANMVSHTTTTTNDTPMVLIPSPARASTKKRRGRPLGSNNRPKPPINIKEDTNTHMEIVCIEIPTGRNIMGALVKYARRRQVNMTVLRGNGFVSHVTLLHPESRSPVIPMEGPFEMTSLFGILELMHFLCNLGFRVGCFCFVTVFQGFKDLVV* 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2060 157 CDD DUF296 65 130 IPR005175 -
Mtr4g2060 157 Pfam Plants and Prokaryotes Conserved (PCC) domain 62 131 IPR005175 -
Mtr4g2060 157 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 14 126 - -
Mtr4g2060 157 SUPERFAMILY AF0104/ALDC/Ptd012-like 59 128 - -
Mtr4g2060 157 MobiDBLite consensus disorder prediction 1 53 - -
Mtr4g2060 157 ProSiteProfiles PPC domain profile profile. 57 157 IPR005175 -
Mtr4g2060 157 MobiDBLite consensus disorder prediction 7 22 - -
Mtr4g2060 157 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 14 126 IPR014476 GO:0003680
Mtr4g2060 157 Gene3D - 59 150 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2060 Mtr-Chr4 34124379 34125380 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g2060 32 125 AT-hook Motif Nuclear Localized (AHL) Family AT2G42940 39.362 1.37e-18 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2060 - - mtr:MTR_4g069110 256.144