Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mtr4g2053 | ATGAGAAAACCCAAATCAAAGGAGTTTCGTAAGAAACAACGCTTCTCAGAAGAACTAGACGAAATCAACCTCTTGAATTCATGGATTCAATCTCAAAAACCAGAATCCGGTTCAAACCCAATGTCTCTTCCACCTCTCCCCAACAACTCCCCCGTCGGCCGCCTCGCCGACGGCACGTTCTCTCGCTACGCCGGCGTGGCCCGGTTTGAACAGTTACCGATATCGAAGAATATCAAAAAGGCATTGATATCGAAGAAAACCCAAGACGAATTACGTTCGAAATTCGTTTCCATGACTGACATTCAACGAGCTTCTCTTCCCCATGCGCTTTGTGGTCGTGATGTTCTTGGTGCCGCCAAAACTGGTTCTGGAAAAACACTTGCTTTCATTATTCCTGTGTTGGAGAAATTGTATAGAAAGAGATGGGGACCGGAAGATGGGGTTGGGAGCATAATCATATCACCTACATGGGAATTAGCTGGTCAGATTTTTGCCGTGTTGAAGGCTATTGGGTGTATCCATGGTTTTAGTGCTGGCCTCCTCATTGGTGGTCGTCAGGGTGTTGCCACAGAGAAAGAATGTGTCAACAAGCTAAATGTATTGATCTGCACACCCGGTCGCCTTCTACAACACATGGATGAAACTCCCAATTTTGATTGTTCAAAGATGCAGGTTTTGGTACTAGATGAGGCTGACCGTATTCTTGATAGTGGATTCAAGAAGGAACTAAATGCAATCATCTCACAATTACCAAAGCGTAGACAAACCATGCTTTTCTCGGCAACTCAAACAAAGTCGGTTCAAGATCTTGCAAGACTAAGTTTGAAGGACCCCGAGTATATAAGTGTGCACGAAGAGTCTGTGACTGCAACTCCTACTCTTTTGAAGCAAAAGGTGATGATCGTTCCCCTGGATCAAAAGTTAGATATGCTATGGAATTTCATAAAGACACATCTAAAGTCAAAAACACTTGTCTTTCTATCAAGCTGTAAACAGGTAAAATTTGTGTTTGAGGCATTTAAGAAACTTCACCCTGGCATACCGTTGAAGTGCCTTCATGGGAGGATGAAACAGGAAAAAAGAATGGCAATATATTCCGAGTTCTGTGAGAAGTGCTCAATTCTCTTCGCAACTGATGTGGCTGCAAGAGGCCTTGATTTTAATAGGGCAGTCGACTGGGTTGTTCAGGTAGATTGTCCCGAGAATGTAGCATCTTACATACATCGAGTTGGTCGTACTGCTCGCTATAAATCTCTTGGAAAGTCAGTTTTATATCTATTGCCTTCAGAAACTAAGATGCTTGAAAAGTTAGAAGCAGGAAAGGTTCCAGTTCATTATCCTCCGAAGCCAAGGAAAGAACTGCTGCAACCGGTGTCCAGTTTGCTTGCATCTTTACTGGTCAAGTACCCAGAACTTCAGCAGCAGGCCCAAAGGGCATTTGTCACATACTTGAGATCCATCCACCTCCAAAAAGATAAAGAAATCTTTGACGTTTTGAAACTTCCTATTGATGAGTATTCAGCATCATTAGGTCTGCCAATGACCCCCAAAATCCGTTTTCTAAAACAGAAAATTAAATCTAAAGCTGTGGCAACAAAATCAATTTTAGTTGAACCTGAGGTTCCAAAAAAGGAAAATGTCTTGGAAGGTTCAAGAGAAAAGATAGACACAGTTGTTTTCAAAGATGAGGAAATTGAAAACGATCTTCTTCATGTGGCTGATACCTCAAATGAAGGCGATGGGAAGTCAGCTGAAATTGGAGAGTTAATGCCAGCAACTCGTTTATTAAAGAAAAAAAAGCTCAAGATTAACATGCATAGACCACTGGGGAGTCGGGTTGTATTCGACGATGAAGGCAACACACTTCCTCCACTAGCCAGGATTGCTGACCCACAAAGTGGCAATGGAACATTGATTGATCCAGAACAAAAAGCTGAATACTATAAAAGGATGCGAGAGGATTTGAAGAAGGCAGACAAGGAAGACAAACTTGTAGAGCGTCAGCGACTTAGGGATAAAAAATTTAAGCAGAAAATGAAATGGAAGGCTGGTAATGAGGAAGAAGAGGACAACCAAGATAACACCTCTGGGTCAGGAGACAAAACGGTAAATAGACGTCATAAAAAGAGTAAAATATACTTTGATAGTGACAATGATGAGGGTGAAAGAAAAGAAGCTTCAAGGAAACAAACGGAAGATCAAGAAGAGTTGGCTTTGAGGTTGTTACAATCCATGCACTGA | 2241 | 0.4203 | MRKPKSKEFRKKQRFSEELDEINLLNSWIQSQKPESGSNPMSLPPLPNNSPVGRLADGTFSRYAGVARFEQLPISKNIKKALISKKTQDELRSKFVSMTDIQRASLPHALCGRDVLGAAKTGSGKTLAFIIPVLEKLYRKRWGPEDGVGSIIISPTWELAGQIFAVLKAIGCIHGFSAGLLIGGRQGVATEKECVNKLNVLICTPGRLLQHMDETPNFDCSKMQVLVLDEADRILDSGFKKELNAIISQLPKRRQTMLFSATQTKSVQDLARLSLKDPEYISVHEESVTATPTLLKQKVMIVPLDQKLDMLWNFIKTHLKSKTLVFLSSCKQVKFVFEAFKKLHPGIPLKCLHGRMKQEKRMAIYSEFCEKCSILFATDVAARGLDFNRAVDWVVQVDCPENVASYIHRVGRTARYKSLGKSVLYLLPSETKMLEKLEAGKVPVHYPPKPRKELLQPVSSLLASLLVKYPELQQQAQRAFVTYLRSIHLQKDKEIFDVLKLPIDEYSASLGLPMTPKIRFLKQKIKSKAVATKSILVEPEVPKKENVLEGSREKIDTVVFKDEEIENDLLHVADTSNEGDGKSAEIGELMPATRLLKKKKLKINMHRPLGSRVVFDDEGNTLPPLARIADPQSGNGTLIDPEQKAEYYKRMREDLKKADKEDKLVERQRLRDKKFKQKMKWKAGNEEEEDNQDNTSGSGDKTVNRRHKKSKIYFDSDNDEGERKEASRKQTEDQEELALRLLQSMH* | 747 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mtr4g2053 | 746 | MobiDBLite | consensus disorder prediction | 709 | 736 | - | - | |
Mtr4g2053 | 746 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 147 | 436 | IPR027417 | - | |
Mtr4g2053 | 746 | PANTHER | RNA HELICASE | 63 | 547 | - | - | |
Mtr4g2053 | 746 | SMART | DUF4217_3 | 457 | 520 | IPR025313 | - | |
Mtr4g2053 | 746 | MobiDBLite | consensus disorder prediction | 674 | 746 | - | - | |
Mtr4g2053 | 746 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 303 | 455 | IPR001650 | - | |
Mtr4g2053 | 746 | Pfam | Domain of unknown function (DUF4217) | 461 | 518 | IPR025313 | - | |
Mtr4g2053 | 746 | Pfam | DEAD/DEAH box helicase | 99 | 270 | IPR011545 | GO:0003676|GO:0005524 | |
Mtr4g2053 | 746 | Coils | Coil | 648 | 668 | - | - | |
Mtr4g2053 | 746 | CDD | SF2_C_DEAD | 295 | 426 | - | - | |
Mtr4g2053 | 746 | Gene3D | - | 58 | 287 | IPR027417 | - | |
Mtr4g2053 | 746 | Pfam | Helicase conserved C-terminal domain | 307 | 416 | IPR001650 | - | |
Mtr4g2053 | 746 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 106 | 281 | IPR014001 | - | |
Mtr4g2053 | 746 | SMART | helicmild6 | 334 | 417 | IPR001650 | - | |
Mtr4g2053 | 746 | CDD | DEADc_DDX10 | 87 | 284 | - | - | |
Mtr4g2053 | 746 | PANTHER | ATP-DEPENDENT RNA HELICASE DDX10-RELATED | 63 | 547 | - | - | |
Mtr4g2053 | 746 | MobiDBLite | consensus disorder prediction | 29 | 50 | - | - | |
Mtr4g2053 | 746 | ProSitePatterns | DEAD-box subfamily ATP-dependent helicases signature. | 227 | 235 | IPR000629 | - | |
Mtr4g2053 | 746 | Gene3D | - | 293 | 538 | IPR027417 | - | |
Mtr4g2053 | 746 | SMART | ultradead3 | 94 | 298 | IPR014001 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Mtr4g2053 | Mtr-Chr4 | 34046648 | 34053014 | Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Mtr4g2053 | 102 | 438 | Eukaryotic Initiation Factors Gene Family | AT3G19760 | 29.794 | 1.24e-34 | 135 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mtr4g2053 | K14776 | - | gmx:100792106 | 1160.21 |