Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2053 ATGAGAAAACCCAAATCAAAGGAGTTTCGTAAGAAACAACGCTTCTCAGAAGAACTAGACGAAATCAACCTCTTGAATTCATGGATTCAATCTCAAAAACCAGAATCCGGTTCAAACCCAATGTCTCTTCCACCTCTCCCCAACAACTCCCCCGTCGGCCGCCTCGCCGACGGCACGTTCTCTCGCTACGCCGGCGTGGCCCGGTTTGAACAGTTACCGATATCGAAGAATATCAAAAAGGCATTGATATCGAAGAAAACCCAAGACGAATTACGTTCGAAATTCGTTTCCATGACTGACATTCAACGAGCTTCTCTTCCCCATGCGCTTTGTGGTCGTGATGTTCTTGGTGCCGCCAAAACTGGTTCTGGAAAAACACTTGCTTTCATTATTCCTGTGTTGGAGAAATTGTATAGAAAGAGATGGGGACCGGAAGATGGGGTTGGGAGCATAATCATATCACCTACATGGGAATTAGCTGGTCAGATTTTTGCCGTGTTGAAGGCTATTGGGTGTATCCATGGTTTTAGTGCTGGCCTCCTCATTGGTGGTCGTCAGGGTGTTGCCACAGAGAAAGAATGTGTCAACAAGCTAAATGTATTGATCTGCACACCCGGTCGCCTTCTACAACACATGGATGAAACTCCCAATTTTGATTGTTCAAAGATGCAGGTTTTGGTACTAGATGAGGCTGACCGTATTCTTGATAGTGGATTCAAGAAGGAACTAAATGCAATCATCTCACAATTACCAAAGCGTAGACAAACCATGCTTTTCTCGGCAACTCAAACAAAGTCGGTTCAAGATCTTGCAAGACTAAGTTTGAAGGACCCCGAGTATATAAGTGTGCACGAAGAGTCTGTGACTGCAACTCCTACTCTTTTGAAGCAAAAGGTGATGATCGTTCCCCTGGATCAAAAGTTAGATATGCTATGGAATTTCATAAAGACACATCTAAAGTCAAAAACACTTGTCTTTCTATCAAGCTGTAAACAGGTAAAATTTGTGTTTGAGGCATTTAAGAAACTTCACCCTGGCATACCGTTGAAGTGCCTTCATGGGAGGATGAAACAGGAAAAAAGAATGGCAATATATTCCGAGTTCTGTGAGAAGTGCTCAATTCTCTTCGCAACTGATGTGGCTGCAAGAGGCCTTGATTTTAATAGGGCAGTCGACTGGGTTGTTCAGGTAGATTGTCCCGAGAATGTAGCATCTTACATACATCGAGTTGGTCGTACTGCTCGCTATAAATCTCTTGGAAAGTCAGTTTTATATCTATTGCCTTCAGAAACTAAGATGCTTGAAAAGTTAGAAGCAGGAAAGGTTCCAGTTCATTATCCTCCGAAGCCAAGGAAAGAACTGCTGCAACCGGTGTCCAGTTTGCTTGCATCTTTACTGGTCAAGTACCCAGAACTTCAGCAGCAGGCCCAAAGGGCATTTGTCACATACTTGAGATCCATCCACCTCCAAAAAGATAAAGAAATCTTTGACGTTTTGAAACTTCCTATTGATGAGTATTCAGCATCATTAGGTCTGCCAATGACCCCCAAAATCCGTTTTCTAAAACAGAAAATTAAATCTAAAGCTGTGGCAACAAAATCAATTTTAGTTGAACCTGAGGTTCCAAAAAAGGAAAATGTCTTGGAAGGTTCAAGAGAAAAGATAGACACAGTTGTTTTCAAAGATGAGGAAATTGAAAACGATCTTCTTCATGTGGCTGATACCTCAAATGAAGGCGATGGGAAGTCAGCTGAAATTGGAGAGTTAATGCCAGCAACTCGTTTATTAAAGAAAAAAAAGCTCAAGATTAACATGCATAGACCACTGGGGAGTCGGGTTGTATTCGACGATGAAGGCAACACACTTCCTCCACTAGCCAGGATTGCTGACCCACAAAGTGGCAATGGAACATTGATTGATCCAGAACAAAAAGCTGAATACTATAAAAGGATGCGAGAGGATTTGAAGAAGGCAGACAAGGAAGACAAACTTGTAGAGCGTCAGCGACTTAGGGATAAAAAATTTAAGCAGAAAATGAAATGGAAGGCTGGTAATGAGGAAGAAGAGGACAACCAAGATAACACCTCTGGGTCAGGAGACAAAACGGTAAATAGACGTCATAAAAAGAGTAAAATATACTTTGATAGTGACAATGATGAGGGTGAAAGAAAAGAAGCTTCAAGGAAACAAACGGAAGATCAAGAAGAGTTGGCTTTGAGGTTGTTACAATCCATGCACTGA 2241 0.4203 MRKPKSKEFRKKQRFSEELDEINLLNSWIQSQKPESGSNPMSLPPLPNNSPVGRLADGTFSRYAGVARFEQLPISKNIKKALISKKTQDELRSKFVSMTDIQRASLPHALCGRDVLGAAKTGSGKTLAFIIPVLEKLYRKRWGPEDGVGSIIISPTWELAGQIFAVLKAIGCIHGFSAGLLIGGRQGVATEKECVNKLNVLICTPGRLLQHMDETPNFDCSKMQVLVLDEADRILDSGFKKELNAIISQLPKRRQTMLFSATQTKSVQDLARLSLKDPEYISVHEESVTATPTLLKQKVMIVPLDQKLDMLWNFIKTHLKSKTLVFLSSCKQVKFVFEAFKKLHPGIPLKCLHGRMKQEKRMAIYSEFCEKCSILFATDVAARGLDFNRAVDWVVQVDCPENVASYIHRVGRTARYKSLGKSVLYLLPSETKMLEKLEAGKVPVHYPPKPRKELLQPVSSLLASLLVKYPELQQQAQRAFVTYLRSIHLQKDKEIFDVLKLPIDEYSASLGLPMTPKIRFLKQKIKSKAVATKSILVEPEVPKKENVLEGSREKIDTVVFKDEEIENDLLHVADTSNEGDGKSAEIGELMPATRLLKKKKLKINMHRPLGSRVVFDDEGNTLPPLARIADPQSGNGTLIDPEQKAEYYKRMREDLKKADKEDKLVERQRLRDKKFKQKMKWKAGNEEEEDNQDNTSGSGDKTVNRRHKKSKIYFDSDNDEGERKEASRKQTEDQEELALRLLQSMH* 747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2053 746 MobiDBLite consensus disorder prediction 709 736 - -
Mtr4g2053 746 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 147 436 IPR027417 -
Mtr4g2053 746 PANTHER RNA HELICASE 63 547 - -
Mtr4g2053 746 SMART DUF4217_3 457 520 IPR025313 -
Mtr4g2053 746 MobiDBLite consensus disorder prediction 674 746 - -
Mtr4g2053 746 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 303 455 IPR001650 -
Mtr4g2053 746 Pfam Domain of unknown function (DUF4217) 461 518 IPR025313 -
Mtr4g2053 746 Pfam DEAD/DEAH box helicase 99 270 IPR011545 GO:0003676|GO:0005524
Mtr4g2053 746 Coils Coil 648 668 - -
Mtr4g2053 746 CDD SF2_C_DEAD 295 426 - -
Mtr4g2053 746 Gene3D - 58 287 IPR027417 -
Mtr4g2053 746 Pfam Helicase conserved C-terminal domain 307 416 IPR001650 -
Mtr4g2053 746 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 106 281 IPR014001 -
Mtr4g2053 746 SMART helicmild6 334 417 IPR001650 -
Mtr4g2053 746 CDD DEADc_DDX10 87 284 - -
Mtr4g2053 746 PANTHER ATP-DEPENDENT RNA HELICASE DDX10-RELATED 63 547 - -
Mtr4g2053 746 MobiDBLite consensus disorder prediction 29 50 - -
Mtr4g2053 746 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 227 235 IPR000629 -
Mtr4g2053 746 Gene3D - 293 538 IPR027417 -
Mtr4g2053 746 SMART ultradead3 94 298 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2053 Mtr-Chr4 34046648 34053014 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g2053 102 438 Eukaryotic Initiation Factors Gene Family AT3G19760 29.794 1.24e-34 135
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2053 K14776 - gmx:100792106 1160.21