Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2050 ATGGACGACGATTACGCTTCCACCGATGAAGATTATCAATACTCCGATCAAGACGTCGAAGAAGAAGATTCCGTCGGTGAATTCTACGAAAACGCCGACGATTCTATTCAGTTGCCCTCTTCTATTGCTCCCGCTGCTCAGGTGATTACGAAGGAATCACTGATAGTTGCACAGAAGGAGGACTTGCGCAGAGTGATGGACATGCTTTCTGTAAGACAAGAACATGCACGCATAATGCTTATTTATCATCGTTGGGATGTGGAAAAATTGTTTGAAGTTTATGTAGAAAAAGGGAAGGCATTTATGTTTGCTCAGGCTGGTGTTAGTGTTGATGAATATCATGACTCTGGCTCGCTGGATAGTGCTATTGTTATGTGTGAAATCTGCATGGACGACATTCCCAGTGATGAAGCAACAAGAATGGACTGTGGTCACTGCTTTTGCAATACATGTTGGACACAGCATTTCTTTGTCAAGGTAAACGAGGGTCAAAGTAAACGCATCAGATGCATGGCTCACAAATGCAATTCGATTTGTGATGAAGCTGTTGTAAGAACTTTACTTGGTAGAAAGCACCCTGATATGGCAGAAAAGTATGCACGCTTTCTTCTTGAATCCTACATCGAAGACAATAACAAAGTTAAATGGTGTCCGAGCACGCCACATTGTGGGAATGCAATTCGTGTTGGGGGTGATGATGACTTGTGTGAGGTAGAATGTTCATGTGGTGAACAATTTTGTTTTAAATGCTTGTCAGAAGCACACTCCCCCTGTTCGTGTTTGATGTGGGAGCTCTGGGAAAAGAAGTGTCGAGATGAATCAGAAACTGTTAATTGGATAACTGTTCATACAAAATCCTGTCCAAAGTGCCACAAACCGGTGGAGAAAAATGGTGGTTGTAATTTGGTTAGCTGTATTTGCGGCCAAGCATTTTGTTGGTTGTGTGGTGGAGCTACTGGCCGTGATCATACTTGGTCAAGTATAGCTGGTCACAGCTGTGGTCGCTACAAAGAACAAGAGAAATCAGCTGAGCGGGCAAAGAGGGATCTCTATAGGTACATGCATTATCATAACCGGTATAAAGCTCACACAGATTCCTTTAAGCTTGAAAGTAAACTGAAAGATATCATACAAGGGAAGATTTCTATTACGGAAGAAAAACATTCTGGACGAAAAAAAACTGAACTCAATGATTATAGCTGGGTAAATAATGGACTCTTGAGACTTTTCAGATCTAGACGCGTCCTTTCATATTCATATGCGTTTGCATTTTATATGTTTGGAGACGAGCTTTTTAAAGAACAAATGTCAGAAGCTGAAAGGGAAATGAAACAGAACTTATTTGAGGATCAACAGCAGCAGTTAGAGGCAAATGTTGAAAAACTTTCTAAGATTTTGGAGGAGCCTTTCGACACCTTTAAATATGCTAAGCTTATGGAGATAAGGATGCAGATAATAACTCTGTCTGCACTCATTGATGATCTTTGTAAAAAAATGTATGAGTGCATCGACAATGATTTATTAGATTCTATTAATCTCGGTAGTGTCCACAGTATAGCACCATATAAATCAAAGGGCATAGAGAAGGCTTCAGAGCTTCCGGTTTGTTGGAGCAATAAAGCTGACAATACGGGTGTAACAGCAGAGCTTAATCAGTCAGAAGAGAGTGGATGTTCTTCTCGTAAGCGTGCCAGAAAAGAAGGTGGCTTTTTTGATCTAAACTTGCCAGCTGAAGTTGTAGACAGAAATTGA 1752 0.4081 MDDDYASTDEDYQYSDQDVEEEDSVGEFYENADDSIQLPSSIAPAAQVITKESLIVAQKEDLRRVMDMLSVRQEHARIMLIYHRWDVEKLFEVYVEKGKAFMFAQAGVSVDEYHDSGSLDSAIVMCEICMDDIPSDEATRMDCGHCFCNTCWTQHFFVKVNEGQSKRIRCMAHKCNSICDEAVVRTLLGRKHPDMAEKYARFLLESYIEDNNKVKWCPSTPHCGNAIRVGGDDDLCEVECSCGEQFCFKCLSEAHSPCSCLMWELWEKKCRDESETVNWITVHTKSCPKCHKPVEKNGGCNLVSCICGQAFCWLCGGATGRDHTWSSIAGHSCGRYKEQEKSAERAKRDLYRYMHYHNRYKAHTDSFKLESKLKDIIQGKISITEEKHSGRKKTELNDYSWVNNGLLRLFRSRRVLSYSYAFAFYMFGDELFKEQMSEAEREMKQNLFEDQQQQLEANVEKLSKILEEPFDTFKYAKLMEIRMQIITLSALIDDLCKKMYECIDNDLLDSINLGSVHSIAPYKSKGIEKASELPVCWSNKADNTGVTAELNQSEESGCSSRKRARKEGGFFDLNLPAEVVDRN* 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2050 583 SMART ibrneu5 197 260 IPR002867 -
Mtr4g2050 583 SMART ibrneu5 268 333 IPR002867 -
Mtr4g2050 583 SUPERFAMILY RING/U-box 122 210 - -
Mtr4g2050 583 Pfam Ariadne domain 337 583 IPR045840 -
Mtr4g2050 583 SUPERFAMILY RING/U-box 197 266 - -
Mtr4g2050 583 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 120 211 IPR013083 -
Mtr4g2050 583 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 7 526 IPR031127 GO:0004842|GO:0016567
Mtr4g2050 583 ProSiteProfiles Zinc finger RING-type profile. 126 174 IPR001841 -
Mtr4g2050 583 MobiDBLite consensus disorder prediction 1 24 - -
Mtr4g2050 583 SUPERFAMILY RING/U-box 267 325 - -
Mtr4g2050 583 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ARI2-RELATED 7 526 - -
Mtr4g2050 583 ProSiteProfiles TRIAD supradomain profile. 122 337 IPR044066 -
Mtr4g2050 583 CDD RING-HC_RBR_TRIAD1_like 126 175 - -
Mtr4g2050 583 Gene3D - 256 510 - -
Mtr4g2050 583 Pfam IBR domain, a half RING-finger domain 197 260 IPR002867 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2050 Mtr-Chr4 34020168 34024796 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g2050 66 561 ARIADNE family AT2G16090 66.400 0.0 682
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2050 K11968 - gmx:100783343 953.355
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g2050 4 34020168 34024796 Mtr4g2050 4 34020168 34024796 ECH