Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2040 ATGGAAATTCTCCCCTCCGACGAAACCCCACCGGAAACCCCCGCTATTCCCGAAAACCCCACAACTCCGATCGACAATTCCCCAAACCCTACCGGAATCGAAGAAGGTGTAACCCTCGACGTATCGGGAAAAAATCTGGAACTTCCGGTACCGGAGAATTCTTCAGACGATGCAGTGGAGAGTTTGTATATGTACAAGAACGTTTACAGTTTGATTCCGAAGTCGGTTGGTGGTTTAATGCGGTTGAAAACGCTGAAATTCTTTGGAAATGAGATTAACTTATTTGCGCCGGAGTTTGGGAACATGACGAGGTTAGAGAGGTTGCAGATGAAGGTATCTTCGCCGGGAATTGGTGGGTTGCCGTTGCATAAATTGAAGGGTTTGAAAGAACTTGAGCTTTCTAAGGGTCCTTCTAGACCTTCTGCTTTTCCTATTTTGACTGAGATTGCTGCTCTCACGTGCTTGACCAAGCTTTGTATTTGTCATTTCAATATAAGATATCTTCCTCCGGAAATTGGATGCTTAACGAATCTGGAATATCTTGATCTTTCATTCAATAAAATGAAGACATTGCCCCCAGAGATTAGTTCTTTGAAAGCATTGATATCAATGAAAGTTGCGAATAATAAGTTGGTAGAGTTACCGCCGGCTTTGACCTCACTATCAAGGTTGGAGAATTTGGACCTGTCAAATAATAGGCTGACTTCGTTAGGATCACTTGAACTTAGCTCAATGCATAGACTTCAGAATTTAAGTCTTCAGCACAACAAGCTGCCCAGCATTTTTCAAATTCCTTCATGGATATGCTGTAATATGGAAGGAAATGATGGTGATGGATGCAAAGATAGTTATAGCAGTTCTTCTGTTGAAATGGATGTCTATGAAACCAATTTGCTGGAAAGTGAGGAAACCTTTTCTCATGGACCTGATACCATCTCTTCAAGCGTATTAACAAACTCCTCATCTAACAGTAGATGTTTTGCAGCCTGGAAGTCGTCAGGTAAACGGTGGAAGCGGCGACACAGTAAACAGCATAAAACTCGTCAAGAGCAGAAAGCTCGTCAAGAGCGGTTGAATAACAGCAGGAAGTGGAAAGGTGTAGATCATGATCAGCTGTTAAGCAAGAAGATCCACAGAATTTCTGAACCAGAAAATCTGGATACTCTTGTCTCTGAAAACTGCACAGAAACTGTCTCAGACAATGGAAGCCTGGATGACAATCATAAAAAAATATTCTCGGAAGAAGCAGCTCAGAACAATTTAATTGATAATATCGACAATGATGAGGTAATCATTGAAAAGCAGTTTTCTCAAGAAGATTGCTGCACTGCAGAAAGTAAAGATGAACGAGATGCATCCTCATGCTCCTTAGACAATGGGCAAAGTGAACAGGATGGAGCATCTTGTTCAGATTTTTCGAAGTGTAGTTTTAAAACAAAGAGGCATTCAGATCGGGATCTTGATAATCCTAAACCCTGCAAGTCTAGAAAACCGATTGGTGATGGCTCATTATTGTCTTCCAAGTACAGTAAAATTTCATTTTGTGGCACTGAGGACCATCTATCAGATGGCTTTTATGATGCGGGGCGTGATCGTCCGTTTATGCCTCTTGAGAATTACGAGCAAAATCAGTGTCTTGCTTCTCGTGAAGTCATCCTCTTAGACAGACAAAGGGATGAAGAATTGGATGCCATTCTGCTATCTGCTCAGGGACTGGTCTCTAATTTGAAGCAGTTAAATGGTTTAAACAAATCTGGGAGCCAGGATGAAGTATATAACTTGCAGACAGCATCACTGCTTGCACTCTTTGTATCTGATCATTTTGGCGGAAGTGATAGAGGTGCTATTATAGAAAGGGCACGCAAATCTGTTTCTGGCTCAAACTATAGTAAGCCTTTTGTCTGTACATGTTCGACCGGAAGCAGCACGAGTATAAATGCTGCAACTGAACCAGTTGTCAATGCCATAGAAGATATCAATCTTTCTATGATCTCTGAAAAATCTCTTGATTCTATAAAAAAAAGGCGAAATTCAATCATTGTTCCAATTGGCTCTGTTCAGTACGGGGTCTGTAGGCACAGAGCTCTTCTTTTTAAGTATTTATGTGATCACATGGAGCCACCTGTACCTTGCGAGCTAGTTAGGGGTTACCTGGATTTTTCACCACATGCCTGGAATATCATTTTGATAAAGAGGAGTGATACATGGGTTCGAATGCTTGTTGATGCTTGCCGACCTTATGATATTAGAGAAGAGAAAGACACCGAATATTTCTGCAGGTACATTCCTCTTCGTCGAACCCAAATTCCTCTTTCAACTAGCATTCTTCCCAGTCCTGATAATTCCTTTCCATCTCTCTCTAATTGTGATGAACTTGAGAAAAAAGCTTTAACTACATTAGTTCGGTGCAAATATGGATCAGTCGAGGCTGCTGTGAAGGTGCGTACTTTGGAAGTACAGGAAAATTCAGCAGACAAAATAAAAAACTTTGAATATAATTCTTTGGGAGAAATCAGAATTCTTGGTGCTTTTAAACACCCCTGTATAGTGGAAATATATGGACACCAAATATCGTGCATATGGACTATCTCAGCTGATGGTAATCCGAAGCATCGAGTGTTGAGATCTGCAATTTTTATGGAATATGTGAAAGGGGGCTCCTTAAGAACCTATCTAGAAAAGTTGTCGGAAGCTGGTGAAAAGCATGTTCCTGTGGAGTTGGCGTTGTATATTGCCAAAGATGTCTCATGCGCTTTATTGGAGCTGCATTCAAAGCACATAATTCACCGTGACATAAAAAGTGAAAACATTCTGTTCGATTGCGATAGGAAGAGAGATGATGGAACTCCCACTGTGAAGCTCTGTGATTTTGATAGTGCAGTGCCACTAAGATCACCTCTACATGCATGCTGTATTGCTCATGTAGGAACACCTCCTCCTTCTTTGTGTGTGGGAACACCTCGGTGGATGGCTCCAGAGGTCATGCGAACTATGTACAAGAAAAACAATTATGGATTGGAAGCTGATATTTGGTCATTTGGATGTTTACTTCTGGAGATGCTAACTTTGCAAATTCCATATTTTGGAGTACCTGATTCACACGTCCATGATAGTCTGCAGATGGGTAAACGACCACAACTAACTGATGAGCTGGAGGCATTGAGCTCAATGAATGAACCCACAATGATTCAATCTGGTGAAGAGCTGGAAAAATCAGATGCTGAGACAGATACATTGAAGTTCCTTGTTGATTTGTTTCATAGGTGCGTCGAAGAAAATCCAAATGAACGACTTACCGCTGAAGAAATCCATGAAATGCTGCTTGGACACACAAGTCGCATACAAGTTCAAAATGTTAGTGAGATTTAG 3369 0.412 MEILPSDETPPETPAIPENPTTPIDNSPNPTGIEEGVTLDVSGKNLELPVPENSSDDAVESLYMYKNVYSLIPKSVGGLMRLKTLKFFGNEINLFAPEFGNMTRLERLQMKVSSPGIGGLPLHKLKGLKELELSKGPSRPSAFPILTEIAALTCLTKLCICHFNIRYLPPEIGCLTNLEYLDLSFNKMKTLPPEISSLKALISMKVANNKLVELPPALTSLSRLENLDLSNNRLTSLGSLELSSMHRLQNLSLQHNKLPSIFQIPSWICCNMEGNDGDGCKDSYSSSSVEMDVYETNLLESEETFSHGPDTISSSVLTNSSSNSRCFAAWKSSGKRWKRRHSKQHKTRQEQKARQERLNNSRKWKGVDHDQLLSKKIHRISEPENLDTLVSENCTETVSDNGSLDDNHKKIFSEEAAQNNLIDNIDNDEVIIEKQFSQEDCCTAESKDERDASSCSLDNGQSEQDGASCSDFSKCSFKTKRHSDRDLDNPKPCKSRKPIGDGSLLSSKYSKISFCGTEDHLSDGFYDAGRDRPFMPLENYEQNQCLASREVILLDRQRDEELDAILLSAQGLVSNLKQLNGLNKSGSQDEVYNLQTASLLALFVSDHFGGSDRGAIIERARKSVSGSNYSKPFVCTCSTGSSTSINAATEPVVNAIEDINLSMISEKSLDSIKKRRNSIIVPIGSVQYGVCRHRALLFKYLCDHMEPPVPCELVRGYLDFSPHAWNIILIKRSDTWVRMLVDACRPYDIREEKDTEYFCRYIPLRRTQIPLSTSILPSPDNSFPSLSNCDELEKKALTTLVRCKYGSVEAAVKVRTLEVQENSADKIKNFEYNSLGEIRILGAFKHPCIVEIYGHQISCIWTISADGNPKHRVLRSAIFMEYVKGGSLRTYLEKLSEAGEKHVPVELALYIAKDVSCALLELHSKHIIHRDIKSENILFDCDRKRDDGTPTVKLCDFDSAVPLRSPLHACCIAHVGTPPPSLCVGTPRWMAPEVMRTMYKKNNYGLEADIWSFGCLLLEMLTLQIPYFGVPDSHVHDSLQMGKRPQLTDELEALSSMNEPTMIQSGEELEKSDAETDTLKFLVDLFHRCVEENPNERLTAEEIHEMLLGHTSRIQVQNVSEI* 1123
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2040 1122 SMART serkin_6 790 1107 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr4g2040 1122 PRINTS Leucine-rich repeat signature 178 191 - -
Mtr4g2040 1122 PRINTS Leucine-rich repeat signature 221 234 - -
Mtr4g2040 1122 Pfam Protein kinase domain 822 1105 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr4g2040 1122 SUPERFAMILY L domain-like 39 266 - -
Mtr4g2040 1122 MobiDBLite consensus disorder prediction 10 24 - -
Mtr4g2040 1122 MobiDBLite consensus disorder prediction 1 35 - -
Mtr4g2040 1122 ProSiteProfiles Leucine-rich repeat profile. 177 198 IPR001611 GO:0005515
Mtr4g2040 1122 ProSiteProfiles Leucine-rich repeat profile. 223 244 IPR001611 GO:0005515
Mtr4g2040 1122 PANTHER SERINE/THREONINE-PROTEIN KINASE SBK1 60 1111 - -
Mtr4g2040 1122 Gene3D Transferase(Phosphotransferase) domain 1 785 1121 - -
Mtr4g2040 1122 SMART LRR_typ_2 245 271 IPR003591 -
Mtr4g2040 1122 SMART LRR_typ_2 175 198 IPR003591 -
Mtr4g2040 1122 SMART LRR_typ_2 221 244 IPR003591 -
Mtr4g2040 1122 ProSiteProfiles Protein kinase domain profile. 794 1107 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr4g2040 1122 Gene3D Ribonuclease Inhibitor 26 281 IPR032675 -
Mtr4g2040 1122 SUPERFAMILY Cysteine proteinases 687 745 IPR038765 -
Mtr4g2040 1122 ProSitePatterns Serine/Threonine protein kinases active-site signature. 927 939 IPR008271 GO:0004672|GO:0006468
Mtr4g2040 1122 MobiDBLite consensus disorder prediction 332 365 - -
Mtr4g2040 1122 SMART LRR_sd22_2 175 200 - -
Mtr4g2040 1122 SMART LRR_sd22_2 245 266 - -
Mtr4g2040 1122 SMART LRR_sd22_2 221 242 - -
Mtr4g2040 1122 SUPERFAMILY Protein kinase-like (PK-like) 794 1107 IPR011009 -
Mtr4g2040 1122 PANTHER BNAC08G43810D PROTEIN 60 1111 - -
Mtr4g2040 1122 MobiDBLite consensus disorder prediction 332 348 - -
Mtr4g2040 1122 Pfam Ethylene-responsive protein kinase Le-CTR1 662 742 - -
Mtr4g2040 1122 MobiDBLite consensus disorder prediction 349 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2040 Mtr-Chr4 33912950 33922158 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g2040 780 1107 MAP Kinase Kinase Kinase AT2G24360 26.453 1.39e-22 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-2 Mtr4g2040 Pkinase 1.5e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2040 - - mtr:MTR_4g068740 2215.65