Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2028 ATGCCTTCTCCTTCATTTCACAAGCTTGTTCTACCCTCCACTCTCCAAGCTAAACAACTGAGGCTTCCAGATGATTTTATGAGGAAATATGGTGGTGATATTTCTCCAACTGTTACTCTCACAGTTCCTGATGGCAGTGTGTGGCGTGTAATAATGAAAAAGGTAGACAACAAATTTTGGTTCCTTGACGGCTGGAATGAATTTGTTCAAAACTATTCCATTAGTACTGGATACTTGTTGGTATTCAAATATGAAGGAAAGTCGCATTTCACTGTTAATATTTTTAGTCTGCCTACTTCTGAGATTAACTATCAATCACCCGCACAAAGAAGTAATGAAGCGTCTCTCTTTGGAAAACGTCTTACTATTTTCGAAGAAATGGAAGATGAAGATTCTGTTGAAATCATGGAATCGTCGCCTACGAAGCTTACTCCTAGCCTATTGCAAAACAAAGCAGTTTCCGGGTCAGCTGATAAACTTACTCCTGGCAAGTCTCGTCCGCCTCCAGCACTGCAGAATCTGTTTAATGGATCTAAACTTAATAGCATAAACTGGGGTGAAGGTGGGAATACTCCTTCCAGAAATGACAATTCGGTAGACAACCAGTTGACCAGAGATATAGGTCTCCAGTTTAATGTAGTTGAGTTTAAAAAGTCTAATGAAGAGTTGAAGTTGCGCGCGGCTACTGATGAAAAGGTTAAGAAAACTGCTGTAAAGAAGAGGAAATCAGATGTCCAGGAACCTCCTTCTGAACATGAAGATGAGGTAGAAATGCGCAATAGGTTTTATGAAAGTGCATCCGCAAGGAAAAGAACTGCAACAGCTGAAGAAAGAGAGAAGGCCATCAATGCAGCAAAAACATTTGAACCATCTAATCCTTTCTGTCGGGTTGTCCTACGACCCTCCTATTTATACAGGGGGTGCATAATGTATCTACCATCTTGCTTTGCAGAGAAGAACTTGAATGGCGTTTCAGGAATTATTAAACTTCAAATCTCTGATGGGAGACAGTGGCCAGTTCGCTGCCTTTATAGAGGTGGTAGAGCTAAGTTAAGCCAGGGGTGGTTTGAGTTTTCGCTGGAGAACAATTTAGGGGAAGGCGATGTGTGTGTGTTTGAGCTGGTTGCAACAAAGGAGGTAGTGCTGCAGGTTACTGTATTTCGTATTACAGAGGATGAAGGACCGTTGAGCCCACAGCCTTTGCAGCAGAACCAACATGTGAACCCGGTGAAACTGGTAAACGTTCCGTTTCAGCATCACCTTGCTTCAACTAAACTGATTAGAAATTAA 1290 0.4186 MPSPSFHKLVLPSTLQAKQLRLPDDFMRKYGGDISPTVTLTVPDGSVWRVIMKKVDNKFWFLDGWNEFVQNYSISTGYLLVFKYEGKSHFTVNIFSLPTSEINYQSPAQRSNEASLFGKRLTIFEEMEDEDSVEIMESSPTKLTPSLLQNKAVSGSADKLTPGKSRPPPALQNLFNGSKLNSINWGEGGNTPSRNDNSVDNQLTRDIGLQFNVVEFKKSNEELKLRAATDEKVKKTAVKKRKSDVQEPPSEHEDEVEMRNRFYESASARKRTATAEEREKAINAAKTFEPSNPFCRVVLRPSYLYRGCIMYLPSCFAEKNLNGVSGIIKLQISDGRQWPVRCLYRGGRAKLSQGWFEFSLENNLGEGDVCVFELVATKEVVLQVTVFRITEDEGPLSPQPLQQNQHVNPVKLVNVPFQHHLASTKLIRN* 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2028 429 MobiDBLite consensus disorder prediction 146 200 - -
Mtr4g2028 429 Gene3D - 272 392 IPR015300 -
Mtr4g2028 429 CDD B3_DNA 293 388 IPR003340 GO:0003677
Mtr4g2028 429 ProSiteProfiles B3 DNA-binding domain profile. 5 98 IPR003340 GO:0003677
Mtr4g2028 429 SUPERFAMILY DNA-binding pseudobarrel domain 3 96 IPR015300 -
Mtr4g2028 429 SMART B3_2 6 98 IPR003340 GO:0003677
Mtr4g2028 429 SMART B3_2 295 390 IPR003340 GO:0003677
Mtr4g2028 429 PANTHER B3 DOMAIN TRANSCRIPTION FACTOR VRN1-LIKE PROTEIN 1 418 - -
Mtr4g2028 429 ProSiteProfiles B3 DNA-binding domain profile. 295 390 IPR003340 GO:0003677
Mtr4g2028 429 MobiDBLite consensus disorder prediction 171 200 - -
Mtr4g2028 429 Pfam B3 DNA binding domain 9 96 IPR003340 GO:0003677
Mtr4g2028 429 Pfam B3 DNA binding domain 298 388 IPR003340 GO:0003677
Mtr4g2028 429 PANTHER B3 DOMAIN-CONTAINING 1 418 - -
Mtr4g2028 429 CDD B3_DNA 4 96 IPR003340 GO:0003677
Mtr4g2028 429 Gene3D - 1 97 IPR015300 -
Mtr4g2028 429 SUPERFAMILY DNA-binding pseudobarrel domain 288 389 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2028 Mtr-Chr4 33762718 33765818 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g2028 1 394 B3 DNA Binding Superfamily AT3G18990 50.125 3.85e-125 365
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mtr4g2028 B3 1.8e-16 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g2028 4 33762718 33765818 Mtr4g2028 4 33762718 33765818 ECH