Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2027 ATGGATCATGAGCAGCAAGACAAGCCATCCTTTTTCGCTATCATCAAAGAAGGCTTCAACACCAAGTGCATGAAAGTACCACCGAAGATTGTTATGGATTTGGGTGAAGAGTTTTGGAAGAAAGCATCAATTATTCTAGTATGCTCTTCTGGTGAGAAGTGGGAAGTTAAAATTTTGAAGAAAGCAAATGACATTTATGTGCGAAACTTTGGTTGGCAAAAGTTTCTGAAAGACAACTCAGTGGGACTTGAAGAGTTCTTGGTCTTCACATATATTGGAGAAAACCTATTCAATGTGGAAATTTATGGCAAGAATGGCTTAGAGAAACCATGCTTCAAGAAAAAGCAAGAAGTCGTTGCAGCCCCAATTGTGGCCAAGAGAAAGAGGGGTAGACCAAGAAGAAATCCTGCTGGTGTAGAGGAAGAAAAGGAAGAAGCTGCACCAACAATTGTGGCTAAGACAAAGATGGTACAAAGAAAATATCCCTCGAGAGTATGTGTTAGAAAAGAAAAGGCAGAGACGTTAGCTACAATTGTGACAAAGAAGGGTATACCAAGAAAAAATCCTGCTCCTCTTTCTGTTATTTTAGTAGACTGA 597 0.3953 MDHEQQDKPSFFAIIKEGFNTKCMKVPPKIVMDLGEEFWKKASIILVCSSGEKWEVKILKKANDIYVRNFGWQKFLKDNSVGLEEFLVFTYIGENLFNVEIYGKNGLEKPCFKKKQEVVAAPIVAKRKRGRPRRNPAGVEEEKEEAAPTIVAKTKMVQRKYPSRVCVRKEKAETLATIVTKKGIPRKNPAPLSVILVD* 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2027 198 Pfam B3 DNA binding domain 18 102 IPR003340 GO:0003677
Mtr4g2027 198 PANTHER B3 DOMAIN-CONTAINING 4 136 - -
Mtr4g2027 198 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0625400-RELATED 4 136 - -
Mtr4g2027 198 SUPERFAMILY DNA-binding pseudobarrel domain 5 106 IPR015300 -
Mtr4g2027 198 SMART B3_2 11 105 IPR003340 GO:0003677
Mtr4g2027 198 CDD B3_DNA 9 102 IPR003340 GO:0003677
Mtr4g2027 198 Gene3D - 2 106 IPR015300 -
Mtr4g2027 198 ProSiteProfiles B3 DNA-binding domain profile. 44 105 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2027 Mtr-Chr4 33757736 33760084 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g2027 4 146 B3 DNA Binding Superfamily AT3G17010 28.767 2.38e-13 65.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mtr4g2027 B3 7.7e-11 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2027 - - mtr:MTR_4g068310 401.749