Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2026 ATGGATTATGATCACCAAGACAAACCATCCTTCTTCGCAATCATCAAAGAAGGCTTCAACATCAACAGCCTGAAGGTACCACCGGAGATTGTTACGGATTTGGGTGAAGAGTTGTGGAAGAATACGTTTATGATTCTGGTAGGTTCGTCTGGTGAGAAGTGGGAAGTGAGTATTTTGAAGAAAGGGAATGACATATATCTACAAATTGGTTGGCAGAAATTTCTGATAGACAACAAAGTGATGCTTGAAGAGTTATTGGTTTTCACATATGATGGGGAGAACAAGTTCCAGGGGCAAATTTTTGGCAAGAATGGATTGGAGAGACCATGCTTCAAGAATGTACCAGAACAAGAAGAAGTACAAGAAGAAGAAGAAGAAGTTACTGCAGCACCTCCATTCACCGTGGCCAAGAGAAAGAGGGGCAGACCAAGAAAAGTTCCTTCTCCTGAGAGTGAGTGCTTTAAGAAAGAAAAAGCTGAAGTTCCAGCAAAAATTGCGGTTAAGAGAAATGATTGTAGAGCAAGAAAAAGTCCTGCTGGTGAGAGAGTATGCTTCAGGAAAAAAGAAGAAGTTGCAGCAACAATCATGTCTATGGGGAAACGAAGAAAAAATCGTCAGAGAGTAAGCGTAAAGAAAGAAGAAGCCAAAGCTGCAGCAACAATGGCGGCTGCGATAAACAAGGGCAGAACAAGAGAAAATCCTGCTGGTGAGAGAGTATGCGTCAAGAAAGAAGATGCAAAAGCTGAAGAAACAATTGTGGCTGAGAGAAAGAAGGGTAGACCAAGAAAATATTCTGCTCCAGTTGTTATTTATGTTAACTGA 822 0.4124 MDYDHQDKPSFFAIIKEGFNINSLKVPPEIVTDLGEELWKNTFMILVGSSGEKWEVSILKKGNDIYLQIGWQKFLIDNKVMLEELLVFTYDGENKFQGQIFGKNGLERPCFKNVPEQEEVQEEEEEVTAAPPFTVAKRKRGRPRKVPSPESECFKKEKAEVPAKIAVKRNDCRARKSPAGERVCFRKKEEVAATIMSMGKRRKNRQRVSVKKEEAKAAATMAAAINKGRTRENPAGERVCVKKEDAKAEETIVAERKKGRPRKYSAPVVIYVN* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2026 273 SMART B3_2 11 104 IPR003340 GO:0003677
Mtr4g2026 273 PANTHER B3 DOMAIN-CONTAINING 6 243 - -
Mtr4g2026 273 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0625400-RELATED 6 243 - -
Mtr4g2026 273 Pfam B3 DNA binding domain 19 97 IPR003340 GO:0003677
Mtr4g2026 273 Gene3D - 2 105 IPR015300 -
Mtr4g2026 273 SUPERFAMILY DNA-binding pseudobarrel domain 5 105 IPR015300 -
Mtr4g2026 273 CDD B3_DNA 9 94 IPR003340 GO:0003677
Mtr4g2026 273 ProSiteProfiles B3 DNA-binding domain profile. 9 104 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2026 Mtr-Chr4 33752311 33754733 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g2026 9 125 REM Transcription Factor Family AT3G06220 29.915 5.08e-13 63.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Mtr4g2026 B3 4.2e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2026 - - mtr:MTR_4g068300 510.76