Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2013 ATGGAAGGCCAATATTCGTCAAAGGAGAGGGGTGGAATCAGCCTTTGGACACCATTTGATAGTGGAATGAAAAGTTCATTAAATTCAGATGACATGTTTAACAACATCTCCGAGCTTATGAACTTTGATAGCTATGCTGGTTGGTGCAATGGTTCATCATCAATAACTGATCAAACTTTAACTAATGATCTTTCATCATTTGCATATGATGGATTGAATTTATCTGAACACATAAATGGTCCATTTTTTATGACAGAAATTGGTGGAAATTACAATGTTATGGATAGTTATGATGAAAAAGTGCTATTACAAGAAATGGAAACTCAACTTGAGTTCTTAGATAATAATTCAAATGAAACAAATAATAATTTAGATTCACAACAAAATGGTTCATATGATATGTGCAATTACATAATATCAAAATCACCTAGTTGGTCACTTGATGAGAGAATGATGAGTGCTTTATCCTTCTTTAAGGAATCAGCTGGTGGAGGAATACTAGCACAAGTTTGGGCACCTATAAAGTATGGTGATGACTTCATCCTAACTACAAGTGATCAACCATATTTGTTAGATCAAAAGCTTGCAGGTTACCGCGAAGTTTCGAGGTCGTTTACGTTTTCTGCAGAAATGAAAATGGGATCTTGTTGTGCTGGACTTCCTGGTCGCGTGTTTAACTCGCATGTTCCTGAATGGACCTCTAATGTTGGTTACTACCATAAATCTGAGTACTTGAGATTAGATCATGCTATTAGTCACGAGGTTCGGGGATCAATCGCTCTTCCTATATCTGATATGAACTCTGAAGTTTCATGTTGTGCTGTACTTGAACTTGTCACTACAAAGGAAAAGCCTAATTTTGACAAAGAATTAGAATTTGTTTCTCATGCACTTCAGCGTGTGAATCTAAGGACTATTATGCCTCCACGACTTCTTCCTCAGTGTGTATCAAGTAACAAAAGAGCTGCATTAACAGAGATAACTGATGTGTTAAGAGCTGTTTGTCATGCACATAGTCTACCACTAGCACTGACATGGATTCCATGTTGTTATAGTGAAGGAAAAGGTGAAGAATCTGAGCGAATACGAATTAAAGAAGGCCATATAACAAGTTCTAATGAAAAATGTGTATTATGTATTGAAGAATCAGCTTGCTATATCAATGATAAAATGGTAGGAGGATTTGTTCATGCATGTTCTGAACATCATCTTGAGGAAGGACAAGGTATATCTGGAAAAGCTCTTCAATCAAATCATCCATTCTTCTATACCGATGTGAAGGCTTATGATGTTAGTGAATATCCACTTGTTCATCACGCGAGAAAATATAACTTGAATGCTGCCGTTGCAATTAGGCTAAGGAGTACTTATACTAATGATGATGATTATGTGTTAGAATTCTTTCTTCCGATCAATATGATAGGGAGTTCGGAACAACAACTTTTATTAGACAATTTGTCAGATACTATGAGAAGAATTTGCAAGAGTTTGAGGACAGTTTCAGAAGCTGAACTAAGAGGGATGGAAGGTTCTCAATATGAGTTTCAAAAGGAAAATGTCTCAGGTTTTTTTCCTATGTCTCGGGGGAACTCTCAGATAGCGTTCAGTAGTGGTGACAATGATTTATTCCAGATGTCATTCAACGAAACGAACCTAAAAAATAGTGGAAATCAAGCTGCTTACAGTCAGGCAACAAGTGGATCAAGAAAGCAGGCTGAGAAAAAGAGGAGTGCAGTGGAGAAGAATGTTAGCTTGAGTGTTCTCCAACAATACTTTTCTGGTAGTCTGAAGGATGCTGCAAAAAAAATAGGGGTTTGTCCAACAACTCTGAAGAGAATATGCAGACAACATGGAATTTCAAGATGGCCATCGCGCAAGATAAATAAAGTTAATCGTTCATTGAAGAAAATACAAACCGTGCTTGATTCTGTCCAAGGAGTTGAAGGAGTTCTGAAATTTGACCCTCACACTGGTGGATTTGTTGCAGGAGGTTCAATCATCCAACAAATTGGTAAGCATAATAAAACTCTCAAGTTCCCTGAGAAAGCCTCGGTACCTAAGTTGGAGGATGAAGATGTTCTTGTTTCTAACTCATGCGAGGTGGAATTGGAGAAAGACAATGCTATTTCTGTTGACTGTATTGAAGATTCAACAACATGGCTTTGGACAAAGACTCAGGATTGTCCTAAACAAACCACTATAGATTATGTTCTTGAAAAAGAACAAGATCAATGTGGGTTGGACAATAGCAGTTTGCATGATATTGGCTCTCATAGTTCTTTTTCAATGATTGAACTTGGTTTCGAAGAGGGAAAAGGAGCTGATGAACATAACAACCCTACTTCTTCAAGCATGACCGATTCATCAAATGCCTCTGGCTCAATGGTGAATGGAAGTTCATCAGGATCTCAAAGCATTGAGAATCAGAAGCACTCGAAAGTCAAATCAATTTGTGTCGATAGTGAGTCGAAATTCGCTGTCAAAGCTAACTATAGAGGAGACACTATTCGTTTCAAGTTCGATCCATCTGTAGGTTGTTGTCAACTCTATGAAGAAGTTGCAAAAAGGTTTAAGTTACAAAATGGTTCTTTCCAACTCAAGTATCTTGATGATGAAGAGGAATGGGTGATGTTGGTGAATGACTCAGATTTGAAGGAATGTGTAGAGGTTTTGAGTGATATTGGTACACATTGTGTGAAGTTGCTCGTTCGCAATATACATGGCGGCAGTGACAGTTGA 2739 0.3764 MEGQYSSKERGGISLWTPFDSGMKSSLNSDDMFNNISELMNFDSYAGWCNGSSSITDQTLTNDLSSFAYDGLNLSEHINGPFFMTEIGGNYNVMDSYDEKVLLQEMETQLEFLDNNSNETNNNLDSQQNGSYDMCNYIISKSPSWSLDERMMSALSFFKESAGGGILAQVWAPIKYGDDFILTTSDQPYLLDQKLAGYREVSRSFTFSAEMKMGSCCAGLPGRVFNSHVPEWTSNVGYYHKSEYLRLDHAISHEVRGSIALPISDMNSEVSCCAVLELVTTKEKPNFDKELEFVSHALQRVNLRTIMPPRLLPQCVSSNKRAALTEITDVLRAVCHAHSLPLALTWIPCCYSEGKGEESERIRIKEGHITSSNEKCVLCIEESACYINDKMVGGFVHACSEHHLEEGQGISGKALQSNHPFFYTDVKAYDVSEYPLVHHARKYNLNAAVAIRLRSTYTNDDDYVLEFFLPINMIGSSEQQLLLDNLSDTMRRICKSLRTVSEAELRGMEGSQYEFQKENVSGFFPMSRGNSQIAFSSGDNDLFQMSFNETNLKNSGNQAAYSQATSGSRKQAEKKRSAVEKNVSLSVLQQYFSGSLKDAAKKIGVCPTTLKRICRQHGISRWPSRKINKVNRSLKKIQTVLDSVQGVEGVLKFDPHTGGFVAGGSIIQQIGKHNKTLKFPEKASVPKLEDEDVLVSNSCEVELEKDNAISVDCIEDSTTWLWTKTQDCPKQTTIDYVLEKEQDQCGLDNSSLHDIGSHSSFSMIELGFEEGKGADEHNNPTSSSMTDSSNASGSMVNGSSSGSQSIENQKHSKVKSICVDSESKFAVKANYRGDTIRFKFDPSVGCCQLYEEVAKRFKLQNGSFQLKYLDDEEEWVMLVNDSDLKECVEVLSDIGTHCVKLLVRNIHGGSDS* 913
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2013 912 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 8 687 - -
Mtr4g2013 912 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 692 906 - -
Mtr4g2013 912 Pfam PB1 domain 826 904 IPR000270 GO:0005515
Mtr4g2013 912 MobiDBLite consensus disorder prediction 777 809 - -
Mtr4g2013 912 MobiDBLite consensus disorder prediction 771 809 - -
Mtr4g2013 912 Gene3D - 820 903 - -
Mtr4g2013 912 Coils Coil 103 123 - -
Mtr4g2013 912 ProSiteProfiles RWP-RK domain profile. 562 650 IPR003035 -
Mtr4g2013 912 ProSiteProfiles PB1 domain profile. 824 906 IPR000270 GO:0005515
Mtr4g2013 912 Pfam RWP-RK domain 582 630 IPR003035 -
Mtr4g2013 912 SMART PB1_new 824 906 IPR000270 GO:0005515
Mtr4g2013 912 SUPERFAMILY CAD & PB1 domains 820 907 - -
Mtr4g2013 912 CDD PB1_NLP 825 904 IPR034891 -
Mtr4g2013 912 PANTHER PROTEIN NLP8 692 906 IPR045012 GO:0003700
Mtr4g2013 912 PANTHER PROTEIN NLP8 8 687 IPR045012 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2013 Mtr-Chr4 33670301 33676037 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g2013 1 906 NLP Transcription Factor Family AT2G43500 50.104 0.0 790
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Mtr4g2013 PB1 7e-18 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2013 - - aprc:113864503 1200.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr2g3453 2 48673805 48706254 Mtr4g2013 4 33670301 33676037 PCT