Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2005 ATGACGCCTCCGGCGAAGCCAATGCGACCACAACATGAAGGCAGCGGCAGATACTCGGAGGATTCTTCGACTCCTTCCAACAACCTATATGTTGCGAATCTATCGCCGGACGTAACAGATTCCGATCTGATGGATCTGTTCGTTCAGTACGGTGCTCTCGATAGCGTCACATCTTATTCCGCTCGCAATTACGCTTTCGTGTTCTTCAAACGCATTGATGATGCAAAAGCTGCTAAAAACGCTCTTCAGGGATTCAATTTTCGTGGCAATTCCTTGAGAATTGAGTTTGCTAGACCGGCAAAGACATGCAAACAGCTTTGGGTAGGTGGCATTAGCCCAGCTGTTACAAAGGAAGACTTGGAAGCTGACTTCCGTAAATTTGGTAAAGTTGAGGATTTCAAGTTCTTCAGAGACAGAAATACTGCATGTGTTGAATTTTTCAATTTAGATGATGCTATTCAGGCAATGAAAATTATGAATGGGAAACATATCGGTGGGGAAAATATCCGTGTTGACTTCCTCCGATCAAATTATGCAAAAAGAGATCAAGGGCTTGATTATGGGCAATTTCAAGGCAAAAGCTTTGGGCCTTCTGATTCTTATTCTGGACATAAAAGGCCACTACAGAATTCACAACCTCTAATGAGGAGAAAGGGTGACGGTCAACCCAATAATATTTTGTGGATCGGTTATCCTCCCAATGTTCAGATCGATGAGCAAATGCTCCACAATGCCATGATCCTATTTGGTGAAATTGAGAGAATCAAGAGTGTTCCTTCAAGAAATTTTTCATTTGTTGAATTTAGAAGTGTTGATGAAGCCCGGCGTGCAAAAGAGGGTCTTCAAGGGCGCCTTTTCAATGATCCTCACATAACAATTAATTATTCTAATGCTGACCAGGTACAAGGCAAAGACTACCCTGGCTTTTATCCTGGAAGTAATGGGCCAAGACCTGATTTATTCCTAAATGAGCATCCATATCGACCTGCACAAATGGATTTATTTGGTCATAATCGTCCTATGATTCCGAATAGTTTTCCTGGACAATTGCCAAGTGGTGGTAATGTTGGTCCAAACATACCAATGCGGCCTTTTGGTCCTAATGGTGGTCCTGAATCTGTTGTTTCTGGCCCTGAGTTTAACGAGAATAGTACACTACACAAGGGTCCAAACTGGAAACGGCCATCTCCTCCTGCACAAGGGTTGCTTTCTTCTCCTGTACCGGGTGCTAGGCTTCCTGCAAGATCATCCTCTGGTGCATGGGATGTACTTGACATAAATCATATTCCAAGAGATTCTAAGCGGTCAAGGATAGATGGTGCATTACCTAATGATGATCCTTATGCAGGGAGGGGTATCCTTGGTTCAGCAAGCACGAGGATTACAGGTGGAGTACATGCTGTCCAACCTGATCATATATGGCGCGGACTTATTGCAAAAGGAGGAACTCCTGTTTGTCGTGCTAGATGCATCCCTGTAGGGAAAGGGATCGGGACAGAGCTTCCTGAAGTTGTGGATTGCTCAGCTAGGACGGGATTGGATACACTCGCAGCACACTATGCTGATGCAATTGACTTTGAGATTGTTTTCTTTCTGCCTGATAGTGAAAATGATTTTGGTTCATACACTGAATTCCTACGCTACCTTGGTGCAAAAAATCGTGCTGGTGTTGCCAAATTTGAGAATACAACTTTATTCTTGGTGCCTCCTTCAGATTTCCTGACGGATGTTCTGAAAGTCACCGGACCGGAACGTCTATATGGTGTCGTTCTCAAGTTTGCACCAGTACAAAGTGGTGTGCCCGTGCACCAATCATCACATTTGCCTGTACCGTCAAATCAATATATGCAGCAGATGCCTCCTTCACAGGCTGAATATGATATGAATCCTGCAAAAGAGGAACAAGTTTTAGCAATGAATTACAACCGAATGTTGCACGAGGATTCTAAGCTTCCTGCTAAACAAGTATACCCACCTACAGGTGGGCCTTCTTCAGTTCAGCCTGCAGCTTCGGACTATGCTCTAAACACTGCTGCTTCTGGGTCTCAAGCTGGAGTTGCATTAACACCTGAGCTTATTGCAACTTTAGCTTCTTTTCTGCCCACAAATGTGCAGTCACCTGCTATTGATGGTGCTAAGTCAGGAGCAGGCTCCTCAACTGTGAAGCCTCCATTTCCTCCTGTGGCACCTAATGATGGAAACCAATCTCAAATATGGAAACAGGATCATCAAATTGCGGATCAATCCATTCATCCATCTCAGCAGTTTAGGAATATGTATAACAGTCATAATGCTCATCATCAGCCTTACCCGCCAGCATCAGCTCCTGGCCACACTGCTCAAGCGTTCTCTGGCAGTTCTCATATTCAAGACAATGCTGTTAACCAGCAACAGCAAGGAGTTGTTTCATCTAGACTCGTGTCTAATTTTGTGACACCTACTCAAAGTGGACAGGTAGCTGCATCCCCCCATTTCAGTCATCAGTATCAGGCTGAAGTTCCCCCCAATACTCAGAAAGGCTTTCCAGGAAGTGATGTCTCTGTTTTATACAATTCTCAGGCTTTCCAGCAACCTAATAATAACCACCATCCTTTCCAGCAACCTAATAATAACCCCCAGCATTTCCAGCAATCTAATAATAACCCCCAACCTTTCCAGCAACCCAATAATTCTATTGCCTTATCTAGTCAAGTTAACAGTGCTAATCCTCAGCATCAGCCTGTCATGCAATATACTGCAGACCAAGTAAACTCAAACCCTCCCATCCAACAACATCCTGCCTTTGGAGTTGGTCAAGGCCCCCCAGAATTGGAGGCTGATAAGAACCAGAGATACCAGTCAACATTGCAGTTTGCTGCCAATCTTCTACTCCAAATACAGCAGCAGCAAACACAAGGAGCACATGGGCCAGGAGTTCAACAATAA 2925 0.4434 MTPPAKPMRPQHEGSGRYSEDSSTPSNNLYVANLSPDVTDSDLMDLFVQYGALDSVTSYSARNYAFVFFKRIDDAKAAKNALQGFNFRGNSLRIEFARPAKTCKQLWVGGISPAVTKEDLEADFRKFGKVEDFKFFRDRNTACVEFFNLDDAIQAMKIMNGKHIGGENIRVDFLRSNYAKRDQGLDYGQFQGKSFGPSDSYSGHKRPLQNSQPLMRRKGDGQPNNILWIGYPPNVQIDEQMLHNAMILFGEIERIKSVPSRNFSFVEFRSVDEARRAKEGLQGRLFNDPHITINYSNADQVQGKDYPGFYPGSNGPRPDLFLNEHPYRPAQMDLFGHNRPMIPNSFPGQLPSGGNVGPNIPMRPFGPNGGPESVVSGPEFNENSTLHKGPNWKRPSPPAQGLLSSPVPGARLPARSSSGAWDVLDINHIPRDSKRSRIDGALPNDDPYAGRGILGSASTRITGGVHAVQPDHIWRGLIAKGGTPVCRARCIPVGKGIGTELPEVVDCSARTGLDTLAAHYADAIDFEIVFFLPDSENDFGSYTEFLRYLGAKNRAGVAKFENTTLFLVPPSDFLTDVLKVTGPERLYGVVLKFAPVQSGVPVHQSSHLPVPSNQYMQQMPPSQAEYDMNPAKEEQVLAMNYNRMLHEDSKLPAKQVYPPTGGPSSVQPAASDYALNTAASGSQAGVALTPELIATLASFLPTNVQSPAIDGAKSGAGSSTVKPPFPPVAPNDGNQSQIWKQDHQIADQSIHPSQQFRNMYNSHNAHHQPYPPASAPGHTAQAFSGSSHIQDNAVNQQQQGVVSSRLVSNFVTPTQSGQVAASPHFSHQYQAEVPPNTQKGFPGSDVSVLYNSQAFQQPNNNHHPFQQPNNNPQHFQQSNNNPQPFQQPNNSIALSSQVNSANPQHQPVMQYTADQVNSNPPIQQHPAFGVGQGPPELEADKNQRYQSTLQFAANLLLQIQQQQTQGAHGPGVQQ* 975
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2005 974 MobiDBLite consensus disorder prediction 710 735 - -
Mtr4g2005 974 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 225 298 IPR000504 GO:0003723
Mtr4g2005 974 Gene3D - 9 101 IPR012677 -
Mtr4g2005 974 PANTHER FLOWERING TIME CONTROL PROTEIN FPA 1 973 - -
Mtr4g2005 974 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 27 99 IPR000504 GO:0003723
Mtr4g2005 974 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 29 92 IPR000504 GO:0003723
Mtr4g2005 974 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 237 288 IPR000504 GO:0003723
Mtr4g2005 974 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 106 170 IPR000504 GO:0003723
Mtr4g2005 974 MobiDBLite consensus disorder prediction 856 890 - -
Mtr4g2005 974 Gene3D - 102 212 IPR012677 -
Mtr4g2005 974 MobiDBLite consensus disorder prediction 762 787 - -
Mtr4g2005 974 CDD RRM3_Spen 29 98 - -
Mtr4g2005 974 Pfam SPOC domain 470 584 IPR012921 -
Mtr4g2005 974 CDD RRM3_Spen 227 297 - -
Mtr4g2005 974 SMART rrm1_1 105 172 IPR000504 GO:0003723
Mtr4g2005 974 SMART rrm1_1 226 294 IPR000504 GO:0003723
Mtr4g2005 974 SMART rrm1_1 28 95 IPR000504 GO:0003723
Mtr4g2005 974 MobiDBLite consensus disorder prediction 194 219 - -
Mtr4g2005 974 MobiDBLite consensus disorder prediction 1 26 - -
Mtr4g2005 974 MobiDBLite consensus disorder prediction 194 209 - -
Mtr4g2005 974 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 104 176 IPR000504 GO:0003723
Mtr4g2005 974 MobiDBLite consensus disorder prediction 366 416 - -
Mtr4g2005 974 Gene3D - 214 306 IPR012677 -
Mtr4g2005 974 PANTHER RNA RECOGNITION MOTIF-CONTAINING 1 973 - -
Mtr4g2005 974 SUPERFAMILY RNA-binding domain, RBD 105 296 IPR035979 GO:0003676
Mtr4g2005 974 CDD RRM3_Spen 106 175 - -
Mtr4g2005 974 SUPERFAMILY RNA-binding domain, RBD 8 101 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2005 Mtr-Chr4 33591467 33601838 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g2005 27 288 Eukaryotic Initiation Factors Gene Family AT4G34110 22.997 1.18e-08 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2005 - - mtr:MTR_4g068120 1905.18