Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g2001 ATGAAAATACAGTGTGATGTGTGTGAAAAAGCACCTGCTACGGTGATTTGTTGTGCTGATGAAGCTGCTTTGTGTGCTAAATGTGATGTTGAAGTTCATGCTGCTAATAAGCTTGCTAGCAAACATCAAAGGCTTCTTCTTCAATGTCTTTCTAACAAGCTTCCTAAATGTGATATCTGCCAAGATAAGCCAGCTTTCATATTTTGTGTTGAAGACAGAGCACTGTTCTGCAAGGACTGCGATGAACCAATTCATGTAGCTGGTAGTCTTTCTGGAAACCACCAGCGCTTCCTTGCTACCGGTATCCGTGTGGCTTTGGCTTCTAGTTGCACCAAAGACAACGAGAAAAGCCAAGTTGAACCATCTAATCCAGACACACAACAAGTTCCCGTCAAAGTTTCTCCTCCTCAGCAAGTGCCTAGTTTTGCATCCCCTTGGGCTGTTGATGATTTCTTGGAATTAACCGGCTTTGATTCACCTGACAAGAAGCAATCCATGGAGTTTGGAGAGCTTGAATGGCTATCAGATGCAGGTCTTTTCAATGACCAGTTTCCTCAGGAAGGTTTAGCTGCAGCTGAAGTTCCTCAACTTCCGGTAATGCATGCTAGCAGTGTTTATCCTTACAAAGCCTCTAAATCTTATATGTCTTACAAAAAGCCTAGGATTGAAGTCCGACATGAAGACGATGATGATGAGCACTTCATGGTGCCAGATCTCGGCTAA 723 0.4343 MKIQCDVCEKAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPKCDICQDKPAFIFCVEDRALFCKDCDEPIHVAGSLSGNHQRFLATGIRVALASSCTKDNEKSQVEPSNPDTQQVPVKVSPPQQVPSFASPWAVDDFLELTGFDSPDKKQSMEFGELEWLSDAGLFNDQFPQEGLAAAEVPQLPVMHASSVYPYKASKSYMSYKKPRIEVRHEDDDDEHFMVPDLG* 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g2001 240 SMART bboxneu5 4 47 IPR000315 GO:0008270
Mtr4g2001 240 SMART bboxneu5 52 99 IPR000315 GO:0008270
Mtr4g2001 240 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Mtr4g2001 240 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Mtr4g2001 240 MobiDBLite consensus disorder prediction 113 137 - -
Mtr4g2001 240 Gene3D Classic Zinc Finger 1 95 - -
Mtr4g2001 240 PANTHER B-BOX ZINC FINGER PROTEIN 24 1 240 - -
Mtr4g2001 240 CDD Bbox1_BBX-like 5 47 - -
Mtr4g2001 240 Pfam B-box zinc finger 4 44 IPR000315 GO:0008270
Mtr4g2001 240 Pfam B-box zinc finger 52 95 IPR000315 GO:0008270
Mtr4g2001 240 CDD Bbox1_BBX-like 56 98 - -
Mtr4g2001 240 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g2001 Mtr-Chr4 33556561 33559492 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g2001 1 162 Orphan Transcription Factor Family AT1G06040 66.667 8.05e-72 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Mtr4g2001 zf-B_box 9.7e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g2001 - - gmx:100779183 395.586
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr2g3439 2 48515268 48517523 Mtr4g2001 4 33556561 33559492 PCT