Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1987 ATGAATCCCAAACGTTCTAGCCAAGATGATCCTGATTCCAGGCCAGTGCGCACAAGTGATAGGATCAAGACGAGACCACCAGCTTATAACCGTGCACCATTCTTGTATTACAACTCAAATCTTAGGCGCCCCAGGAAAAGCAAGAATAAGACAAGAACAGCAGCTTCCCAGATTGCTAAGATGTTGCGTCCAGGGAATCGGAAAGCACGTGATTCGAATAATAATTCTGGCTCTGCCAACCTTCGGCGCTCAACCAGGGAGAGAAGAGTTAATGTAAATCTTATGGAGTTCGCAGACAGCTCTGGATCTGAGGATGCCGATTTAATGAGACCCTCATATCGACCGTTGAGAAACCGGATTAGCAACAGTGTCAGCCGGGATGATGCAATATCTTCTAAGCGCAAAAGAGGAGTGGATGCCAAACCAACTCCTCGACGTGAAGGTCTACGGCCTCGTCGATCGAAGGCTGCTGGTAGAGAAAGGTTAATATCAGAATCAGATGATGATCAAGACCTTTCAGAGGGAAAGGTTGAACAAGATGAAACAGAAAATGGAAATGATGTTGAGGAAAATGATGCAGAAGATGATCATAATGAGATGGAGGGGGATGCCGAGGGTGAAGATGAAGGCGAGGATGAAGGCGATGAGGATGGCGATGAAGATGGTGATGATGAAGACGGTGAAGAACAGGATGGAAGAAGGCGCTACGATCTTCGAAATCGTGCAGAGGTCCGCAGGTTCTCTATGGAGGAAGGGAAAGCACGGCCAAGGTCTCCACGAAGAGTTTTACATCAAGGTATGGGAACTAAGGTCAACAGGGATGTAAGGAAGGGTGGATCACGAGTTCACAAGCGCCATCGCTTAACAAGGCCTGAAGATTCTGATGACTCCCTTCTTGTGGATGAGTTGGACCAAGGCCCTGCTATTCCATGGGGTCGTGGTGGCAGCAGATCTGGCCCACCTTTTCTTTTTGGGGGCGTAGACACACATGGAACAACAGCTTGGGGATTAAACCTTGCTGCATCAGGTTGGGGTCATCAGGGTGATGCCTTTGCCACACTAACTTCAGGGATTCAAACTGCTGGTCCAAGTTCCAAGGGAGGGGCAGATATCCAACCCTTGCAGATTGATGAGAGTGTAAGTTTTGATGATATAGGCGGGCTCTCTGAATACATTGATGCTCTAAAGGAAATGGTTTTCTTTCCATTATTGTATCCAGATTTTTTTGCAAGTTACCACATAACTCCACCTAGGGGGGTGTTGTTATGTGGGCCCCCTGGCACGGGGAAAACATTGATTGCAAGAGCTTTGGCTTGTGCTGCTTCAAAAGCTGGTCAGAAGGTTAGCTTTTACATGCGCAAAGGAGCAGACGTGCTAAGCAAGTGGGTTGGTGAGGCTGAAAGACAACTGAAACTTCTTTTTGAGGAAGCACAAAGGAATCAACCTTCTATTATCTTCTTTGATGAAATAGATGGACTTGCACCTGTGAGATCTAGCAAGTCAGAACAAATTCACAATTCCATTGTGTCCACTTTGCTTGCTTTGATGGATGGGCTTGATTCTCGTGGACAGGTTGTTTTGATTGGAGCTACCAACAGGATTGATGCTATTGATGGAGCCTTGCGACGTCCTGGCAGATTTGATCGTGAATTTAACTTTCCCTTGCCTGGTGGTGAGGCACGTGCTGAAATATTAGACATTCATACTCGTAAGTGGAAGCACCCTCCTCCAGAGGAACTCAAAAAGGAACTTGCAGCTAGTTGTGTAGGTTATTGTGGTGCTGACCTAAAGGCTCTCTGTACTGAAGCGGCTATTCGTGCTTTCCGTCAGAAATATCCACAGGTTTATACAAGTGATGACAAATTTCTAATTGATGTTGATTCTATCACGGTAGAAAAGTATCATTTTATTGAAGCAATGTCTACAATTACTCCTGCTGCTCATAGAGGAGCTATTGTGCACTCTAGGCCATTGTCTCTAGTAGTTCAACCATGTCTTCAGAGACATCTAGAGAAAGTCATGGGTACTATATCTGATATTTTCCCTCCAGTATCTGTTGCATCAGAATTGACTAAACTGTCAATGCTTTCGTACGGGTCTGCGATTCCACTTGTATATCGACCTAGGCTTCTACTTTGTGGTGGTGAAGGCACAGGGCTGGATCATCTTGGGCCTGCGGTTTTACATGAACTGGAAAAATTTCCTGTGCATTCATTAGGACTTCCATCTCTTCTGTCAGATCCTAGTGCAAAGACACCGGAGGAGGCGTTGGTACATATATTTGGTGAAGCTAGAAGAACAACGCCATCCATTCTTTATTTACCACAGTTTGATGTTTGGTGGGAAACTGCTCATGAACAGCTCAGAGCCGTTCTCCTGACTATGCTAGAAGAATTGCCATCTGACTTACCTATCTTACTTCTTGGTACATCCTCAGCTGCACTTGCTGATGTCGAGGAAGTGCCCACTTCAGTTTTCCCTCATCGCTCAGTTTATCAAGTGAACATGCCATCTACCGAAGATAGGACCTTGTTTTTTGATCGTTTAATAGAAGCTGCTATGTCGATATTGTTGGAGCGAATCAGCAAGAAATCTCAGGATGCAAAACGCCTTTCTGAACTTCCCAGGGCACCAAAATTGGCTAGTGGTCCAAAGGCATCTGAGCTAAAAGCAAAGGTCGAAGCTGAGCAGCATGCACTTCGAAGATTGCGAATGTGCCTCAGAGATGTTTGCAACCGGATATTGTATGACAAACGATTTAATGCCTTCCATTTTCCAGTCTCAGATGAAGATGCGCCTAATTATCGCTCAATTATACAGAACCCAATGGACATTGCCACCATCTTGCAGCACGTTGATAACGGCAACTATATTACATGTGCTGCATTCCTTCAGGACATTGATCTTATTGTTTCCAATGCAAAGGCTTACAATGGAGACGACTACAATGGCACTAGGATTGTCAGTAGAGCTTGTGAGCTCCGTGATACGGTGCACGGGATGCTCTCTCAAATGGACCCAGCACTGGCTGCATATTGTGACAAGATTGCTAGCCAAGGTGGCCCAGCGCATTTGCCTGGTGAATTAGGGGATATTACATTCCCTGATACTCCTGTTGTACAGCTGGCCACCACTACTAGAACGAGTGCTCGACTTCGTCATGTCCAACCAGAGGTTAATCTGGATCAGGGTTACGAAGTATTGAAGCGGACCAAGAAGATCGGTGACGGTATAAATGCAGAAGACAAGTTACAAGATTCAATACCAACAAAGTCGTCTCAGGAGCAGCATCAGACACAAGACGTGGATTCTGAAAGAATGGAACCTATAGAAATCGATGGAGATTTGCATGGATCTTGTACAAATAACCTTGCTGATGGTAGCAGCCTTCATGATATCACAATGCTAGATGGTGAATTTTCAAGACAAGTGGAGTCTGTTAAGCAGCGTTTCGTAAAGCGCAGTGAAAAATACAGCATCCCACAACTTGAAAGGCTTTACACGAGAATAATGAAGGGCGTCTTTGAAACCAGAGATAAAGGAATGAGTGATGATGATCTCAAGAATTTGGTTTTGGGGTTTTTGTCGAAATTTGTAGAGGATGATGCAAATTTCTGA 3618 0.4511 MNPKRSSQDDPDSRPVRTSDRIKTRPPAYNRAPFLYYNSNLRRPRKSKNKTRTAASQIAKMLRPGNRKARDSNNNSGSANLRRSTRERRVNVNLMEFADSSGSEDADLMRPSYRPLRNRISNSVSRDDAISSKRKRGVDAKPTPRREGLRPRRSKAAGRERLISESDDDQDLSEGKVEQDETENGNDVEENDAEDDHNEMEGDAEGEDEGEDEGDEDGDEDGDDEDGEEQDGRRRYDLRNRAEVRRFSMEEGKARPRSPRRVLHQGMGTKVNRDVRKGGSRVHKRHRLTRPEDSDDSLLVDELDQGPAIPWGRGGSRSGPPFLFGGVDTHGTTAWGLNLAASGWGHQGDAFATLTSGIQTAGPSSKGGADIQPLQIDESVSFDDIGGLSEYIDALKEMVFFPLLYPDFFASYHITPPRGVLLCGPPGTGKTLIARALACAASKAGQKVSFYMRKGADVLSKWVGEAERQLKLLFEEAQRNQPSIIFFDEIDGLAPVRSSKSEQIHNSIVSTLLALMDGLDSRGQVVLIGATNRIDAIDGALRRPGRFDREFNFPLPGGEARAEILDIHTRKWKHPPPEELKKELAASCVGYCGADLKALCTEAAIRAFRQKYPQVYTSDDKFLIDVDSITVEKYHFIEAMSTITPAAHRGAIVHSRPLSLVVQPCLQRHLEKVMGTISDIFPPVSVASELTKLSMLSYGSAIPLVYRPRLLLCGGEGTGLDHLGPAVLHELEKFPVHSLGLPSLLSDPSAKTPEEALVHIFGEARRTTPSILYLPQFDVWWETAHEQLRAVLLTMLEELPSDLPILLLGTSSAALADVEEVPTSVFPHRSVYQVNMPSTEDRTLFFDRLIEAAMSILLERISKKSQDAKRLSELPRAPKLASGPKASELKAKVEAEQHALRRLRMCLRDVCNRILYDKRFNAFHFPVSDEDAPNYRSIIQNPMDIATILQHVDNGNYITCAAFLQDIDLIVSNAKAYNGDDYNGTRIVSRACELRDTVHGMLSQMDPALAAYCDKIASQGGPAHLPGELGDITFPDTPVVQLATTTRTSARLRHVQPEVNLDQGYEVLKRTKKIGDGINAEDKLQDSIPTKSSQEQHQTQDVDSERMEPIEIDGDLHGSCTNNLADGSSLHDITMLDGEFSRQVESVKQRFVKRSEKYSIPQLERLYTRIMKGVFETRDKGMSDDDLKNLVLGFLSKFVEDDANF* 1206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1987 1205 CDD AAA 416 555 - -
Mtr4g1987 1205 SUPERFAMILY Bromodomain 896 1011 IPR036427 GO:0005515
Mtr4g1987 1205 ProSiteProfiles Bromodomain profile. 923 985 IPR001487 GO:0005515
Mtr4g1987 1205 MobiDBLite consensus disorder prediction 183 227 - -
Mtr4g1987 1205 MobiDBLite consensus disorder prediction 228 258 - -
Mtr4g1987 1205 Pfam ATPase family associated with various cellular activities (AAA) 420 555 IPR003959 GO:0005524|GO:0016887
Mtr4g1987 1205 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 704 919 IPR027417 -
Mtr4g1987 1205 PANTHER BNAC08G44480D PROTEIN 1 1200 - -
Mtr4g1987 1205 MobiDBLite consensus disorder prediction 1 87 - -
Mtr4g1987 1205 MobiDBLite consensus disorder prediction 128 170 - -
Mtr4g1987 1205 Gene3D - 378 648 IPR027417 -
Mtr4g1987 1205 MobiDBLite consensus disorder prediction 1 21 - -
Mtr4g1987 1205 PANTHER AAA DOMAIN-CONTAINING 1 1200 IPR045199 -
Mtr4g1987 1205 CDD Bromo_AAA 900 1009 - -
Mtr4g1987 1205 SMART AAA_5 416 557 IPR003593 -
Mtr4g1987 1205 Gene3D - 556 641 - -
Mtr4g1987 1205 Gene3D - 692 821 IPR027417 -
Mtr4g1987 1205 SMART bromo_6 900 1007 IPR001487 GO:0005515
Mtr4g1987 1205 ProSitePatterns AAA-protein family signature. 525 543 IPR003960 GO:0005524|GO:0016887
Mtr4g1987 1205 Pfam AAA+ lid domain 582 619 IPR041569 -
Mtr4g1987 1205 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 378 645 IPR027417 -
Mtr4g1987 1205 Pfam Bromodomain 914 981 IPR001487 GO:0005515
Mtr4g1987 1205 Gene3D - 892 1020 IPR036427 GO:0005515
Mtr4g1987 1205 PRINTS Bromodomain signature 932 948 IPR001487 GO:0005515
Mtr4g1987 1205 PRINTS Bromodomain signature 948 966 IPR001487 GO:0005515
Mtr4g1987 1205 PRINTS Bromodomain signature 966 985 IPR001487 GO:0005515
Mtr4g1987 1205 MobiDBLite consensus disorder prediction 1078 1105 - -
Mtr4g1987 1205 MobiDBLite consensus disorder prediction 100 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g1987 Mtr-Chr4 33430874 33439205 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g1987 366 620 Calmodulin-binding Proteins AT3G56690 36.680 1.11e-41 164