Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1982 ATGGAGGAAATCAACAACTCAGCAATGAAAGTATCATCATCAATCAGCAGCTGGTTATCTGATTTGGAAATGGACGAATACAATATATTTGCTGAGGAATGCAACCTGAATTTCCTTGATGCTGATGTGGGAGGGTTTCTTTCACAAGACATATCTAATGTATTTCAAGAACAAAACAAACAACAATGTTTGTCTTTGGGGTCCACTTCAACAAATGATCTCAGCAAGTCATTCATTCATGAAACAATTGATGATAGTGACAAAATCAGTGAATCTCTTTCACCAAATATTTCTCCATCTTTTCAGTTTCAAATTCCAAATTCACCCCCTAGTAACTCAAAAGAGAATGAAACAATATCAGTGTCTCCAACCGAATTGGAAAATATGAATCACTCAACAGAAACCTCAAAAGGCAAAAGGCCTCGTGCTCATGGTAGGGATCACATCATGGCTGAGAGAAATCGAAGAGAAAAACTCACCCAGACCTTCATTGCTCTTGCAGCTCTTGTTCCTAACCTTAAAAAGATGGATAAGCTATCTATACTATTTGACACTATCAAATACATGAAAGAGCTTAAAAATCGTTTGGAAGTTGTGGAAGAACAAAACAAAAAAACAAAAGAAAGTTCATCAACCAAACCATGCCTATGCAGCAATGAAGATTCTTCATCATGTGATGATAGTGTTGAATGTGTTATTGGTTCAACATTTCAAGTGGAAGCAAGAGTGTTAGGAAAACAAATGTTGATTCGAATTCAATGTCAGGAGCACAGGGGGCTTCTCGTTAAAATTATGGTTGAAATTCAAAAATATCAACTATTTGTTGTCAATAGCAGTGTCATACCCTTTGGAGATTCTATACTCGACATTACCATCATTGCTCAGTTGGGTGAAGGGTACAACCTGAGCATAAAGGAACTTGTGAAGAACGTACGCATGGCACTATTGAAGTTTATTCATCATAACATGAACATGAGCACGTGCAATTAG 990 0.3687 MEEINNSAMKVSSSISSWLSDLEMDEYNIFAEECNLNFLDADVGGFLSQDISNVFQEQNKQQCLSLGSTSTNDLSKSFIHETIDDSDKISESLSPNISPSFQFQIPNSPPSNSKENETISVSPTELENMNHSTETSKGKRPRAHGRDHIMAERNRREKLTQTFIALAALVPNLKKMDKLSILFDTIKYMKELKNRLEVVEEQNKKTKESSSTKPCLCSNEDSSSCDDSVECVIGSTFQVEARVLGKQMLIRIQCQEHRGLLVKIMVEIQKYQLFVVNSSVIPFGDSILDITIIAQLGEGYNLSIKELVKNVRMALLKFIHHNMNMSTCN* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1982 329 SMART finulus 149 198 IPR011598 GO:0046983
Mtr4g1982 329 MobiDBLite consensus disorder prediction 105 146 - -
Mtr4g1982 329 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 143 192 IPR011598 GO:0046983
Mtr4g1982 329 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 7 319 - -
Mtr4g1982 329 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 148 208 IPR036638 GO:0046983
Mtr4g1982 329 Pfam Helix-loop-helix DNA-binding domain 148 192 IPR011598 GO:0046983
Mtr4g1982 329 MobiDBLite consensus disorder prediction 132 146 - -
Mtr4g1982 329 Coils Coil 189 209 - -
Mtr4g1982 329 MobiDBLite consensus disorder prediction 105 131 - -
Mtr4g1982 329 Gene3D - 130 209 IPR036638 GO:0046983
Mtr4g1982 329 PANTHER BHLH TRANSCRIPTION FACTOR 7 319 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g1982 Mtr-Chr4 33381855 33384687 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g1982 140 319 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 43.316 1.47e-39 140
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mtr4g1982 HLH 1.7e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g1982 - - mtr:MTR_0011s0210 402.905