Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1980 ATGGGAAGTTGTGTATCAACGCAAGGTAAACATGGCGGGCGAAAGAAATCAAAGGATCATCATATCAACACCAAACACAAAATAAATGATCAAAACCATGAGCCTAACACACCAACAACGCGTAGATCAAGTGTGACAGGGCGTAGATCAAGCGTGACATCACGTCAACTTAACGTGGTAACGAATCCAAGTCCAGGAAACATATTTGATAAATATGAATTAGGAAAAGAGCTTGGGAGAGGTGAATTTGGTGTGACACACCGTTGCGTGGAACTTAAAACGGGTGAGGCGTTTGCGTGTAAGAAGATAGCGAAGACAAAGCTGAGGACCGAGATTGATATTCAAGATGTGAGGAGAGAGGTTCAGATTATGAGGCATTTGCCTGAACATCCTAATATTGTGGCATTTAGAGAAGCTTATGAAGATAGAGATGCTGTTTATCTTGTTATGGAATTGTGTGAAGGTGGTGAACTTTTTGATAGGATTGTTGCTAAAGGTCATTATACAGAAAGAGCTGCTGCTAATGTTGCCAAAACCATTCTTGAAGTTTGCAAGGTGTGCCATGAACATGGTGTGATACATAGGGACTTAAAACCTGAAAATTTCTTATTTGCAGATGGAAGTGAAGCAGCTTCACTTAAGGCAATTGATTTTGGCCTTTCCACTTTCTATGTAAATGGTGATAGATTCAATGAAATCGTTGGAAGTCCATATTACATGGCTCCTGAGGTTTTAAGACGTAACTATGGACCGGAGATCGATATCTGGAGCACAGGAGTTATTCTTTATATTTTGCTCTGTGGAGTTCCACCTTTCTGGGCAGAAACTGAAGAAGCCATTGCACAAGCGATTATCCGGGGTAATGTAGATTTCACAAGAGATCCTTGGCCTAAAGTTTCAGAGGAAGCAAAATACCTTGTGAAGCGCATGCTTGATCCAAATCCATTCTCAAGAATCACAGTTCAAGAAGTTCTTGATCATTCTTGGATACAAAATAGGGAGCATGGTAAAAATGTTTCTCTTGGAGACCAAGTGAGGTCGAGGATCAAACAATTCTCCTTGATGAACAGATTCAAAAAGAAAGTCCTTAGAGTGGTGGCTGATAACTTGCCAGATGAACAAATCGACGGGTTTAGGAAAATGTTTGATATGATGGACAAAGACAAAAATGGACACTTAACATTTGAAGAGCTCAAAGATGGCTTTGCAGAGATCGGAAACGTTATTCCTGATCCCGATCTTCAAATGTTAATGGATGCTGCAGATTTTGATGGAAATGGCACCTTGAATTGTGAAGAGTTCATCACAATGAGTGTTCACATGAGAAGGCTTGGAAATGATGAGCATCTCACAGAAGCATTCAATTTCTTTGACAAGAATAAGAGTGGATATGTTGAGTTTGATGAGTTGAAAGATGCCTTATCAGATAATGGTTCGACCGATGACCAAGTGATCAGAGACATTCTCAACGATGTCGACTTGGATAAGGATGGTCGAGTAAGTTTTGAGGAATTTAAGGCAATGATGAAGACAGGAGGAGATTGGAAAATGGCATCAAGACAATATTCAAAAGCATTTCTAAATGCATTAAGCTTCAGAATGTTTAAAGACAAATCTACGGGAGTAGCAACTAACTAA 1638 0.3974 MGSCVSTQGKHGGRKKSKDHHINTKHKINDQNHEPNTPTTRRSSVTGRRSSVTSRQLNVVTNPSPGNIFDKYELGKELGRGEFGVTHRCVELKTGEAFACKKIAKTKLRTEIDIQDVRREVQIMRHLPEHPNIVAFREAYEDRDAVYLVMELCEGGELFDRIVAKGHYTERAAANVAKTILEVCKVCHEHGVIHRDLKPENFLFADGSEAASLKAIDFGLSTFYVNGDRFNEIVGSPYYMAPEVLRRNYGPEIDIWSTGVILYILLCGVPPFWAETEEAIAQAIIRGNVDFTRDPWPKVSEEAKYLVKRMLDPNPFSRITVQEVLDHSWIQNREHGKNVSLGDQVRSRIKQFSLMNRFKKKVLRVVADNLPDEQIDGFRKMFDMMDKDKNGHLTFEELKDGFAEIGNVIPDPDLQMLMDAADFDGNGTLNCEEFITMSVHMRRLGNDEHLTEAFNFFDKNKSGYVEFDELKDALSDNGSTDDQVIRDILNDVDLDKDGRVSFEEFKAMMKTGGDWKMASRQYSKAFLNALSFRMFKDKSTGVATN* 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1980 545 ProSiteProfiles EF-hand calcium-binding domain profile. 480 515 IPR002048 GO:0005509
Mtr4g1980 545 PANTHER SERINE/THREONINE-PROTEIN KINASE 49 525 - -
Mtr4g1980 545 ProSitePatterns Protein kinases ATP-binding region signature. 78 101 IPR017441 GO:0005524
Mtr4g1980 545 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 24 49 525 - -
Mtr4g1980 545 ProSitePatterns EF-hand calcium-binding domain. 422 434 IPR018247 -
Mtr4g1980 545 SMART efh_1 377 405 IPR002048 GO:0005509
Mtr4g1980 545 SMART efh_1 484 512 IPR002048 GO:0005509
Mtr4g1980 545 SMART efh_1 449 477 IPR002048 GO:0005509
Mtr4g1980 545 SMART efh_1 413 441 IPR002048 GO:0005509
Mtr4g1980 545 ProSitePatterns EF-hand calcium-binding domain. 493 505 IPR018247 -
Mtr4g1980 545 SUPERFAMILY Protein kinase-like (PK-like) 52 335 IPR011009 -
Mtr4g1980 545 ProSiteProfiles EF-hand calcium-binding domain profile. 373 408 IPR002048 GO:0005509
Mtr4g1980 545 ProSitePatterns Serine/Threonine protein kinases active-site signature. 192 204 IPR008271 GO:0004672|GO:0006468
Mtr4g1980 545 MobiDBLite consensus disorder prediction 1 55 - -
Mtr4g1980 545 Gene3D Phosphorylase Kinase; domain 1 74 157 - -
Mtr4g1980 545 SMART serkin_6 72 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr4g1980 545 ProSitePatterns EF-hand calcium-binding domain. 386 398 IPR018247 -
Mtr4g1980 545 CDD STKc_CAMK 71 329 - -
Mtr4g1980 545 Pfam EF-hand domain pair 379 437 IPR002048 GO:0005509
Mtr4g1980 545 Pfam EF-hand domain pair 448 510 IPR002048 GO:0005509
Mtr4g1980 545 SUPERFAMILY EF-hand 369 509 IPR011992 -
Mtr4g1980 545 MobiDBLite consensus disorder prediction 33 55 - -
Mtr4g1980 545 ProSiteProfiles EF-hand calcium-binding domain profile. 445 479 IPR002048 GO:0005509
Mtr4g1980 545 Gene3D - 339 512 - -
Mtr4g1980 545 Pfam Protein kinase domain 72 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr4g1980 545 Gene3D Transferase(Phosphotransferase) domain 1 158 338 - -
Mtr4g1980 545 ProSiteProfiles EF-hand calcium-binding domain profile. 409 444 IPR002048 GO:0005509
Mtr4g1980 545 CDD EFh 449 510 IPR002048 GO:0005509
Mtr4g1980 545 ProSiteProfiles Protein kinase domain profile. 72 330 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr4g1980 545 CDD EFh 378 437 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g1980 Mtr-Chr4 33357318 33360957 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g1980 1 537 EF-hand Containing Proteins AT2G31500 66.727 0.0 758
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Mtr4g1980 Pkinase 4e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g1980 K13412 - gmx:100801716 875.544