Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1979 ATGGACTCCGAAGATGATATGCACGATGCTCACGATATGGAGTCCCTTGAAGATGACGATTTCTACAGTGGTGATACGGAAGAAGGTGCGATGGATTATTATAGTGATTATGATGATGATGCTGGTGATTACTTTGATGATGCTGATAAGATTGAGTCTCGTCGACCTGAGCAAAATTTTACCATATTGAAGGAATCTGATATCCGAGTAAGACAGGAAGATGACATTGATAGAGTTGCAGCTGTTCTTTCTGTATCAAGAGTTGCTGCAAGCATACTACTTCGTCACCACAATTGGAGTGTCAGTAAAGTGCATGATGCATGGTTTGCAGATGAAGAGCGAGTCAGAAAAGCGGTTGGCTTGTTGGAGAAGCCAGTTGTCCAGCATCCTAATACCAGCGAGCTTACATGTGGCATCTGTTTTGAAAACTATCCTCGCTCTGGGATTGGAATGGCTTCTTGTGGTCATCCATACTGTTTCTCATGCTGGGAAGGATATATCAGTACATCCATCAACGATGGTCCTGGATGTTTGATGTTGAGATGTCCTGAACCCACTTGTGGGGCTGCTATTGGTCAAGATATGATTGATTTATTAGCATGTAATGAAGATAAAGAAAAGTATGCCCGTTACCTTCGTAGATCTTATATCGAAGACAATAAAAAGTCAAAGTGGTGTCCTGCCCCTGGTTGTGAATATGCGGTTACTTTTGATGCTGGAGGTGGAAATTATGATGTCTCTTGCCTCTGTTCGTATAGCTTTTGTTGGAATTGCACTGAGGAGGCTCATCGTCCAGTGGACTGTGGAACTGTGGTAAAGTGGATTATGAAAAACAGTGCAGAGTCCGAAAACATGAACTGGATACTTGCTAACTCAAAACCATGTCCCAAGTGCAAGCGACCAATCGAAAAAAATCAAGGATGCATGCACATCACGTGCACTCCACCCTGTAAATTTGAATTTTGCTGGTTATGCCTTGGTGCATGGTCAGACCATGGTGAAAGAACTGGTGGTTTTTATGCTTGCAATCGTTATGAAGCAGCTAAGCAAGAGGGAGTGTATGATGATACTGAAAGAAGAAGAGAAATGGCGAAGAATTCATTGGAGAGATACACCCATTATTATGAGCGGTGGGCCAGCAACCAATCTTCAAGGCAGAAAGCTCTTGCAGATCTAGAACAGATGCAGAATGTTCATATTGAGAAGCTTAGTGACACGCAGTGCCAACCTGAGTCACAGCTTAAGTTCATTACGGAGGCCTGGCTGCAGATAGTTGAGTGTAGGAGAGTGCTGAAATGGACGTATGCATATGGTTACTATTTACCTGAGCATGAGGGTGCAAAAAAACAGTTCTTTGAGTATTTGCAAGGTGAAGCAGAATCTGGTCTAGAGAGACTTCATCAATGTGCTGAAAAAGAACTACAGCAATTCCTCACTGCTGAAGGCCAATCTAAAGAATTCAACGACTTCCGTACAAAATTAGCTGGACTAACTAGTGTGACTAAAAACTACTTTGAGAATTTAGTGAGGGCTTTAGAGAATGGTCTATCCGATGTAGATGCTAATGGGGCTTCCTTCAGCAAAGCAACAAGCTCAAAAAATGCTGCAGGGAGCAGTAAGGGGAGAGCTGGGAGAGGAAAGGGAGCTTTGCGAACAAACAGAACTTCTGATGATACTCACTGGAGCTGTGAACATTGTACCTCTGTGAATGTCAAATCTGCCACCACATGCCAGATTTGCAATCAACGTCGATGA 1755 0.4308 MDSEDDMHDAHDMESLEDDDFYSGDTEEGAMDYYSDYDDDAGDYFDDADKIESRRPEQNFTILKESDIRVRQEDDIDRVAAVLSVSRVAASILLRHHNWSVSKVHDAWFADEERVRKAVGLLEKPVVQHPNTSELTCGICFENYPRSGIGMASCGHPYCFSCWEGYISTSINDGPGCLMLRCPEPTCGAAIGQDMIDLLACNEDKEKYARYLRRSYIEDNKKSKWCPAPGCEYAVTFDAGGGNYDVSCLCSYSFCWNCTEEAHRPVDCGTVVKWIMKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHITCTPPCKFEFCWLCLGAWSDHGERTGGFYACNRYEAAKQEGVYDDTERRREMAKNSLERYTHYYERWASNQSSRQKALADLEQMQNVHIEKLSDTQCQPESQLKFITEAWLQIVECRRVLKWTYAYGYYLPEHEGAKKQFFEYLQGEAESGLERLHQCAEKELQQFLTAEGQSKEFNDFRTKLAGLTSVTKNYFENLVRALENGLSDVDANGASFSKATSSKNAAGSSKGRAGRGKGALRTNRTSDDTHWSCEHCTSVNVKSATTCQICNQRR* 585
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1979 584 MobiDBLite consensus disorder prediction 18 33 - -
Mtr4g1979 584 CDD RING-HC_RBR_TRIAD1_like 137 187 - -
Mtr4g1979 584 Gene3D - 264 519 - -
Mtr4g1979 584 ProSiteProfiles Zinc finger RanBP2 type profile. 554 584 IPR001876 -
Mtr4g1979 584 ProSiteProfiles TRIAD supradomain profile. 133 346 IPR044066 -
Mtr4g1979 584 SMART ibrneu5 206 268 IPR002867 -
Mtr4g1979 584 SMART ibrneu5 281 342 IPR002867 -
Mtr4g1979 584 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 131 216 IPR013083 -
Mtr4g1979 584 ProSiteProfiles Zinc finger RING-type profile. 137 181 IPR001841 -
Mtr4g1979 584 MobiDBLite consensus disorder prediction 1 33 - -
Mtr4g1979 584 SUPERFAMILY RING/U-box 206 275 - -
Mtr4g1979 584 MobiDBLite consensus disorder prediction 527 557 - -
Mtr4g1979 584 Pfam Ariadne domain 355 516 IPR045840 -
Mtr4g1979 584 Pfam IBR domain, a half RING-finger domain 285 333 IPR002867 -
Mtr4g1979 584 Pfam IBR domain, a half RING-finger domain 206 268 IPR002867 -
Mtr4g1979 584 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 15 535 IPR031127 GO:0004842|GO:0016567
Mtr4g1979 584 SMART zf_4 559 583 IPR001876 -
Mtr4g1979 584 ProSitePatterns Zinc finger RanBP2-type signature. 561 580 IPR001876 -
Mtr4g1979 584 MobiDBLite consensus disorder prediction 1 17 - -
Mtr4g1979 584 SUPERFAMILY RING/U-box 132 218 - -
Mtr4g1979 584 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 15 535 - -
Mtr4g1979 584 SUPERFAMILY RING/U-box 287 335 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g1979 Mtr-Chr4 33348511 33356016 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g1979 18 584 ARIADNE family AT1G65430 69.686 0.0 828
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g1979 K11968 - gmx:100784195 1042.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr2g3422 2 48295178 48302962 Mtr4g1979 4 33348511 33356016 PCT