Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1973 ATGGAGGAAATCAACAACCCAGCAATGAAAGTATCATCAATCAGCAGCTGGTTAACTGATTTGGAAATGGACGAATACAATATATTTGCTGAGGAATGCAACCTGAATTTCCTTGATGCTGATGTGGGAGGGTTTCTTTCACAAGACATATCTAATGTATTTCAAGAACAAAACAAACAACAATGTTTGTCTTTGGGGTCCACTTCAACAAATGATCTCAGCAAGTCATTCATTCATGAAACAATTGATAATAGTGACAAAATCAATAAATCTCTTTCACCAAATCTTTCTCCATCTTTTCAGTTTCCAATTCCAAAAGAGAATGAAACAATATCAATGTCTCCAACTGAATTGGAAAATATGAATCACTCAACAGAAACTTCAAAAGGGTCATTGGAAAATGAAAACTTGGAAACAAAAACCTCAAAAAGCAAAAGGCCTCGTGCTCATGGTAGAGATCACATCATGGCTGAGAGAAATCGAAGAGAGAAACTCACTCAGACCTTCATTGCTCTTGCAGCTCTTGTTCCTAACCTTAAGAAGATGGACAAGCTCTCTGTATTAGTTGACACTATCAAATACATGAAAGAGCTTAAAAATCGTTTGGAAGTTGTGGAAGAACAAAACAAGAAAAAAAATAAGTCATCGACCAAACCATGCCTATGCAGCGATGAAGATTCTTCATCATGTGATGATAGCGTTGAATGTGTTGTTGGTTCACCATTTCAAGTGGAAGCAAGAGTGTTAGGAAAACAAATGTTAATTCGGATCCAATGTCAGGAGCACAAGGGGCTTCTAGTTAAAATTATGGTTGAAATTCAAAGATATCAACTATTTGTTGTCAATAGTAGTGTCTTACCCTTTGGAGAGTCTACACTCGACATTACCATCATCGCTCAGTTGGGTGAAGGGTACAACTTGAGCACAAAGGAACTTGTGAAGAACGTACGCATGGCTGTATTGAAGTTTCTTGGTGAGGCTTACGTCACCCCTTCATGA 999 0.3774 MEEINNPAMKVSSISSWLTDLEMDEYNIFAEECNLNFLDADVGGFLSQDISNVFQEQNKQQCLSLGSTSTNDLSKSFIHETIDNSDKINKSLSPNLSPSFQFPIPKENETISMSPTELENMNHSTETSKGSLENENLETKTSKSKRPRAHGRDHIMAERNRREKLTQTFIALAALVPNLKKMDKLSVLVDTIKYMKELKNRLEVVEEQNKKKNKSSTKPCLCSDEDSSSCDDSVECVVGSPFQVEARVLGKQMLIRIQCQEHKGLLVKIMVEIQRYQLFVVNSSVLPFGESTLDITIIAQLGEGYNLSTKELVKNVRMAVLKFLGEAYVTPS* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1973 332 Pfam Helix-loop-helix DNA-binding domain 154 198 IPR011598 GO:0046983
Mtr4g1973 332 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 8 324 - -
Mtr4g1973 332 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 154 212 IPR036638 GO:0046983
Mtr4g1973 332 Coils Coil 188 215 - -
Mtr4g1973 332 SMART finulus 155 204 IPR011598 GO:0046983
Mtr4g1973 332 Gene3D - 157 230 IPR036638 GO:0046983
Mtr4g1973 332 MobiDBLite consensus disorder prediction 119 152 - -
Mtr4g1973 332 PANTHER BHLH TRANSCRIPTION FACTOR 8 324 - -
Mtr4g1973 332 MobiDBLite consensus disorder prediction 119 135 - -
Mtr4g1973 332 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 149 198 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g1973 Mtr-Chr4 33200035 33203409 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g1973 146 324 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 44.385 5.78e-40 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mtr4g1973 HLH 1.1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g1973 - - mtr:MTR_0011s0210 392.504