Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1956 ATGGAATCAGATCTTCAGCAGCATCCAACTATGTTTCTAGATCATCAAAATCATCATCATCAACAACAAATGAATTCAGGGTTAACACGGTTTAAATCAGCTCCAAGTTCATATTTTTCGAATATCATTGATAAAGAGTTTTATGAGCATCTTTTCAATAGACCTTCAAGTCCTGAAACAGAAAGAGTTTTTGCAAGGTTTATGAATAGTCTTAGTGGAAGTGGTGGTAGTGGTGGTGGTGGTGGTGGTGATGCTGAAAGTGTTTCTGTTACAGCTTCTATAGCTCCTATAACTGATTCAGTAGTTGATTCATTGACTCAGCAGCTTCCTATAGTGAAGGAAGAGATTGATCAACAATCTCAAACTATGCAAACAATGAATAATAATAATAATAATAATAATAATGAAGCTGTGGATCTTCCACAGCTTCAAAGACAACAAAGTAATAATATGAGTAATTATGGTTCTTCTGCTGCTCCTCAGAGTTTTTACCATAATTCAGGAAGACCACCTTTGCCGAATCAAATGAAGACCGGTCGGTCTAATCTTATTAGACATGGTAGTTCACCTGCTGGATTGTTTTCAAACATTAACATTGATACTGGTTTTGCTGCTATGAGAGGAATAGGAACTATGGGAGCTGCTAATAGCACTAGCAAAGAAGCAAATTTTTCTTCTTCTGTGGTACGGTTAAAGAATGCTCCAAACTATGCCTCAGCGTTAGGAGCTGAAATTGGGAGTAATAGCATTCCACAAAACAATCTTGAACCTGAAGGTTTTGCTGAAACCCGGGGTAACGATTTTATCCCAGGTTTCCCTCTAGGTACTACATGGGAGGATACTGCGATGATATCTGACAATATTACTGGCCTGAAAAGATACAGAGATGATGATGATGTAAAACCATTTCCTCCAGGTTTAAATCCAGCTGAAACTAAGAATGAAACAGGAGGCCAGACTACTTCTGCTCCTTTGGCTCATCAGATGAGTATGCCAAATACTACGGCCGAATTGGCAGCCATTGAGAAGTTTTTGCAGTTCTCAGATTCTGTTCCGTGCAAAATTCGTGCTAAACGTGGCTGTGCCACTCACCCAAGAAGCATTGCAGAAAGGGTTAGAAGAACTAAAATAAGCGAGCGAATGAGGAAACTACAGGATCTTGTGCCAAACATGGATAAGCAAACAAACACATCAGACATGTTGGACTTGGCTGTTGAGTACATTAAAGACCTACAAAACCAAGTTGAGACTCTTTCAGACAATCGGGCTAAGTGCACGTGTTCACACAAGCAACAACAATAA 1302 0.3932 MESDLQQHPTMFLDHQNHHHQQQMNSGLTRFKSAPSSYFSNIIDKEFYEHLFNRPSSPETERVFARFMNSLSGSGGSGGGGGGDAESVSVTASIAPITDSVVDSLTQQLPIVKEEIDQQSQTMQTMNNNNNNNNNEAVDLPQLQRQQSNNMSNYGSSAAPQSFYHNSGRPPLPNQMKTGRSNLIRHGSSPAGLFSNINIDTGFAAMRGIGTMGAANSTSKEANFSSSVVRLKNAPNYASALGAEIGSNSIPQNNLEPEGFAETRGNDFIPGFPLGTTWEDTAMISDNITGLKRYRDDDDVKPFPPGLNPAETKNETGGQTTSAPLAHQMSMPNTTAELAAIEKFLQFSDSVPCKIRAKRGCATHPRSIAERVRRTKISERMRKLQDLVPNMDKQTNTSDMLDLAVEYIKDLQNQVETLSDNRAKCTCSHKQQQ* 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1956 433 Gene3D - 362 433 IPR036638 GO:0046983
Mtr4g1956 433 Pfam Helix-loop-helix DNA-binding domain 366 412 IPR011598 GO:0046983
Mtr4g1956 433 MobiDBLite consensus disorder prediction 295 321 - -
Mtr4g1956 433 Coils Coil 116 136 - -
Mtr4g1956 433 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 18 430 - -
Mtr4g1956 433 MobiDBLite consensus disorder prediction 118 137 - -
Mtr4g1956 433 PANTHER TRANSCRIPTION FACTOR BHLH FAMILY-RELATED 18 430 - -
Mtr4g1956 433 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 361 411 IPR011598 GO:0046983
Mtr4g1956 433 SMART finulus 367 417 IPR011598 GO:0046983
Mtr4g1956 433 Coils Coil 401 428 - -
Mtr4g1956 433 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 364 424 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g1956 Mtr-Chr4 32930840 32935457 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g1956 1 70 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G51140 50.000 1.00e-13 70.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Mtr4g1956 HLH 8.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g1956 - - gmx:100803833 531.561
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g1956 4 32930840 32935457 Mtr4g1956 4 32930840 32935457 ECH
Mtr7g2683 7 43566655 43569751 Mtr4g1956 4 32930840 32935457 ECH
Mtr1g1765 1 25254146 25258084 Mtr4g1956 4 32930840 32935457 ECH