Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1948 ATGAACAATAACTGGCTTTCATTCCCTCTCTCACCTTCTCATTCTTCCTTACCTTCTAATGATCTTCAAGCAACTCAATATCATCACTTTCCTCTTGGATTAGTCAATGACAACATGGAAAACCCTTTCCAAAATCATGATTGGAATCTGATGAACACACACAACAGCAATGAAGTTCCAAAGGTTGCGGATTTTCTCGGTGTATGCAAGTCTGAAAATCACTCAGATCTTGCTACACCGAACGAAATTCAATCTAATGATTCAGATTATCTGTTTACAAATAACAATACTCTCATGCCAATGCAAAACCAAATGGTTACAACATGCACCAATGAGTATCAAGAAAAGGCTAGTAATAGTAATTTGCAGTCTTTGACATTATCCATGGGAAGTGGTAAAGATTCAACATGTGAAACTAGTGGTGAAAATAGTACAAACACTGTTGAAGTTGCTGTTCCTAAAAGAACTTCAGAGACATTTGGACAAAGAACTTCGATATATCGCGGTGTAACAAAACATAGATGGACTGGAAGGTATGAAGCTCACCTTTGGGATAACAGCTGTAGAAGGGAAGGTCAGTCGAGAAAAGGCCGCCAAGTCTATTTGGGTGGATATGATAAAGAAGAGAAAGCTGCTAGGTCTTATGATTTAGCTGCACTTAAGTACTGGGGGACATCCACCACTACCAACTTTCCAGTTAGCAACTATGAGAAGGAAATAGATGAAATGAAGCACATGACAAGACAAGAATTTGTTGCCTCTATTAGAAGGAAAAGCAGCGGTTTCTCTAGGGGTGCATCAATGTACCGTGGAGTTACAAGGCATCACCAACATGGAAGATGGCAAGCAAGGATTGGCAGAGTTGCAGGAAATAAAGATCTATACTTGGGAACTTTCAGCACTGAAGAAGAGGCTGCAGAAGCATACGACATAGCAGCAATAAAATTCAGAGGACTCAACGCTGTAACAAACTTTGACATGACTCGTTACGACGTGAAAGCCATTCTCGAAAGCAACACACTGCCAATTGGAGGAGGAGCTGCAAAAAGACTAAAAGAAGCACAAGCTCTAGAAACTTCGAGAAAACGCGAAGAAATGCTTGCACTTAACTCATCATCTTTCCAATATGGAACATCAAGCTCTAGTAACACTAGACTCCAACCCTACCCTCTCATGCAATATCATCACCAATTTGAACAACCTCAACCATTGCTAACATTACAAAACAACCATGAAAGCTTGAATTCTCAACAATTCTCTCAACACCAAGGTGGTGGTTATTTCCAAACACAGCTTGAGTTGTGTCAACAACAAAACCAACAACCATCTCAGAATAGTAACATAGGTTCATTCTACAATGGTTATTATCAGAATCATCCTGGTTTGTTTCAGATGAATAATATAGGATCTTCTTCTTCATCTTCGGTGATGGGAAATAATGGTGGTGGTTCTAGTGGGATTTATAGTAATAGTGGAGGGTTAATTAGTAATAATGCTGTTGAGGAATTTGTGCCGGTTAAGGTTGATTATGACATGCAAGGTGATGGAAGTGGTTTTGGCGGCTGGTCGGCGGCAGGAGAGAACATGCAGACTGCTGATTTGTTTACAATGTGGAATGACTATGAGACAAGAGAGAATTAG 1641 0.3998 MNNNWLSFPLSPSHSSLPSNDLQATQYHHFPLGLVNDNMENPFQNHDWNLMNTHNSNEVPKVADFLGVCKSENHSDLATPNEIQSNDSDYLFTNNNTLMPMQNQMVTTCTNEYQEKASNSNLQSLTLSMGSGKDSTCETSGENSTNTVEVAVPKRTSETFGQRTSIYRGVTKHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEEKAARSYDLAALKYWGTSTTTNFPVSNYEKEIDEMKHMTRQEFVASIRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLNAVTNFDMTRYDVKAILESNTLPIGGGAAKRLKEAQALETSRKREEMLALNSSSFQYGTSSSSNTRLQPYPLMQYHHQFEQPQPLLTLQNNHESLNSQQFSQHQGGGYFQTQLELCQQQNQQPSQNSNIGSFYNGYYQNHPGLFQMNNIGSSSSSSVMGNNGGGSSGIYSNSGGLISNNAVEEFVPVKVDYDMQGDGSGFGGWSAAGENMQTADLFTMWNDYETREN* 547
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1948 546 SMART rav1_2 166 238 IPR001471 GO:0003700|GO:0006355
Mtr4g1948 546 SMART rav1_2 268 332 IPR001471 GO:0003700|GO:0006355
Mtr4g1948 546 PRINTS Ethylene responsive element binding protein signature 167 178 IPR001471 GO:0003700|GO:0006355
Mtr4g1948 546 PRINTS Ethylene responsive element binding protein signature 308 328 IPR001471 GO:0003700|GO:0006355
Mtr4g1948 546 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR PLT2 4 507 - -
Mtr4g1948 546 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 4 507 - -
Mtr4g1948 546 CDD AP2 267 326 IPR001471 GO:0003700|GO:0006355
Mtr4g1948 546 Pfam AP2 domain 166 224 IPR001471 GO:0003700|GO:0006355
Mtr4g1948 546 Pfam AP2 domain 269 318 IPR001471 GO:0003700|GO:0006355
Mtr4g1948 546 SUPERFAMILY DNA-binding domain 165 234 IPR016177 GO:0003677
Mtr4g1948 546 ProSiteProfiles AP2/ERF domain profile. 268 326 IPR001471 GO:0003700|GO:0006355
Mtr4g1948 546 SUPERFAMILY DNA-binding domain 267 327 IPR016177 GO:0003677
Mtr4g1948 546 Gene3D AP2/ERF domain 268 328 IPR036955 GO:0003700|GO:0006355
Mtr4g1948 546 Gene3D AP2/ERF domain 166 234 IPR036955 GO:0003700|GO:0006355
Mtr4g1948 546 CDD AP2 165 234 IPR001471 GO:0003700|GO:0006355
Mtr4g1948 546 ProSiteProfiles AP2/ERF domain profile. 166 232 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g1948 Mtr-Chr4 32697924 32701230 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g1948 3 540 AP2-EREBP Transcription Factor Family AT1G51190 61.140 0.0 627
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Mtr4g1948 AP2 1.6e-11 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g1948 K09285 - gmx:100788471 763.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g1948 4 32697924 32701230 Mtr4g1948 4 32697924 32701230 ECH