Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1932 ATGAGGAAGCCAGATATTGCATCTGGAAAAAACAACACAAACAATAAACTTAGAAAAGGATTGTGGTCACCAGAGGAAGATGAGAAGCTTATGAACTATATGTTAAATAGTGGACAAGGTTGTTGGAGTGATGTTGCTAGAAATGCTGGATTGCAAAGATGTGGAAAAAGTTGTAGGTTAAGATGGATCAATTACTTGAGGCCTGATCTTAAACGTGGTGCATTCTCACCACAGGAAGAAGAACATATCATTCATTTGCATTCCCTTCTTGGAAACAGATGGTCTCAAATTGCGGCACGCTTACCCGGAAGAACAGACAATGAAATCAAGAACTTTTGGAATTCAACAATAAAGAAAAGACTCAAGAACATGTCGTTGAACACTTCACCAAACGCAAGCGATGAATCCTCGTACGACCCTAACAAAGACCATAACATGGGAGGTTTTATAACTTCTTCAACACAAGATCAACAACATATCGATAATCATTTTATGCCTATGTTCAATACTTCATCTCCATCACCACCAACAATGCAAAACACAGTTTTCAACACCATTATGTCAGGTTCTGGATGTGGATTCTTCAATAATAGTACAACAGGAACATACTTGTCACAGAATAATCATGACAGCAAAAGTTTCTATTTGGAAAAGGTGTTTGGGAGTGTAAATATTATTAATGGTGTAGAAGGTGATGAGATGGAAATTTACAATGTTCCTCCTCTAGAGAGTGTTAATAGTACTATTACTTCTGAACATAGTGTAAAAATGGAGAATGCATGCAATGGAGAAGATGGTAATTACAATAGTAGTTATAACTTTGATGACATAAACAACATTGTTATTAACAACTGCAATGTTGTTAGTAAGAGAAGTGAAAATAGAGTTGATGATGAGGTGGAGAATTTGTTTCATGGAGATTTATCTGTTGGAGATTGGAATTTGGAAGACTTGATGAAAGATGTTTCATCATTTCCATTTCTTGATTTTTCAAACTGA 999 0.3564 MRKPDIASGKNNTNNKLRKGLWSPEEDEKLMNYMLNSGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEEHIIHLHSLLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKNMSLNTSPNASDESSYDPNKDHNMGGFITSSTQDQQHIDNHFMPMFNTSSPSPPTMQNTVFNTIMSGSGCGFFNNSTTGTYLSQNNHDSKSFYLEKVFGSVNIINGVEGDEMEIYNVPPLESVNSTITSEHSVKMENACNGEDGNYNSSYNFDDINNIVINNCNVVSKRSENRVDDEVENLFHGDLSVGDWNLEDLMKDVSSFPFLDFSN* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1932 332 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 121 IPR017930 -
Mtr4g1932 332 CDD SANT 22 66 IPR001005 -
Mtr4g1932 332 Gene3D - 73 146 - -
Mtr4g1932 332 PANTHER MYB DOMAIN PROTEIN 55 8 331 - -
Mtr4g1932 332 MobiDBLite consensus disorder prediction 124 152 - -
Mtr4g1932 332 Pfam Myb-like DNA-binding domain 72 115 IPR001005 -
Mtr4g1932 332 Pfam Myb-like DNA-binding domain 19 66 IPR001005 -
Mtr4g1932 332 SMART sant 71 119 IPR001005 -
Mtr4g1932 332 SMART sant 18 68 IPR001005 -
Mtr4g1932 332 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 14 66 IPR017930 -
Mtr4g1932 332 SUPERFAMILY Homeodomain-like 17 113 IPR009057 -
Mtr4g1932 332 Gene3D - 16 72 - -
Mtr4g1932 332 CDD SANT 74 114 IPR001005 -
Mtr4g1932 332 ProSiteProfiles Myb-like domain profile. 67 117 IPR001005 -
Mtr4g1932 332 ProSiteProfiles Myb-like domain profile. 14 66 IPR001005 -
Mtr4g1932 332 PANTHER MYB TRANSCRIPTION FACTOR 8 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g1932 Mtr-Chr4 32501875 32504591 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g1932 1 330 MYB Transcription Factor Family AT3G08500 46.240 1.31e-76 237
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Mtr4g1932 Myb_DNA-binding 4.7e-12 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g1932 4 32501875 32504591 Mtr4g1932 4 32501875 32504591 ECH
Mtr2g3389 2 47937574 47939747 Mtr4g1932 4 32501875 32504591 PCT