Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1904 ATGAATTCTGAATCCTCACCCGAAACGCCGTCGTACTGGTGCTACAGTTGCACACGCTTCATCAATCTATCCGATCACACCCTCATCGTTTGTCCTCACTGCGATAACGGTTTCGTCGAAGAGATCGCCGCCGGCGAATCCCCGCATCACCGTCTAAGTCCTTTTCCTGCGGATACCGTTTCTTCTCGCCGACAAGGCTTCCGCCGTCGCCGTCGTGACGCTGGTAGTCGTTCACCTTTCAATCCTGTCATCGTTCTTCGTGGAGCCGGTGATGATGGAGTCGGAGAAGACGGCGCTGGTGCTGGTGGTAGCGCTTTTGAACTTTTCTACGATGACGGTGATGGTTCGGGGTTACGTCCTCTACCACCGACGGTTTCGGAGTTTTTGCTTGGATCTGGATTTGATCGGTTGTTGGAGCAGTTTTCTCAGATCGAGATGAATGGTTTTGGACGGCCGGAGAATCCACCGGCGTCAAAAGCGGCGATTGAATCGATGCCGACTGTTGAGATCTGTGAAGAACACGTTAGTTGTGAATTACACTGCGCCGTTTGCAAAGAAGAGTTTGAGCTACACGCGGAGGCGCGTGAGTTGCCTTGCAAACATTTATACCATTCCGATTGCATTCTTCCATGGCTGACAGTGAGAAACTCGTGCCCGGTGTGCCGCCATGAGCTTCCTTCTGATCTCAACAATCCTCTTGAAACTAGGGTTTCTGGTCAAATTGATGAAGAAGCTATCGGGTTAACGATATGGAGGTTACCCGGTGGTGGATTCGCTGTTGGGAGATTCTCCGGTGGAAGAAGTGCCGGGGAGAGTCATTTTCCGGTTGTGTATACTGAGATGGATGGTGGGCTCAATGCTGCACAAGGATCGGCTCCGAGGAGAATATCTAGAACGGTTAGAGCTCATAGGGTTAGGGAAAGTCATGGAATTGGAAGAGTTTTTCGGAATTTTTTCTCATTCTTTGGGAGAATTGGTTCTAGGTCAAATTTAAATTCGAATTCTGGAACAGGGAATGTTGCTTCTGTGAGTAGAAGCCGTAGCTTAGTGAATTCAATGTTCAGTAGAAACTCGCGGCGACGTAGGAGAGCTTTGGAATTGGAAGATTGA 1110 0.4955 MNSESSPETPSYWCYSCTRFINLSDHTLIVCPHCDNGFVEEIAAGESPHHRLSPFPADTVSSRRQGFRRRRRDAGSRSPFNPVIVLRGAGDDGVGEDGAGAGGSAFELFYDDGDGSGLRPLPPTVSEFLLGSGFDRLLEQFSQIEMNGFGRPENPPASKAAIESMPTVEICEEHVSCELHCAVCKEEFELHAEARELPCKHLYHSDCILPWLTVRNSCPVCRHELPSDLNNPLETRVSGQIDEEAIGLTIWRLPGGGFAVGRFSGGRSAGESHFPVVYTEMDGGLNAAQGSAPRRISRTVRAHRVRESHGIGRVFRNFFSFFGRIGSRSNLNSNSGTGNVASVSRSRSLVNSMFSRNSRRRRRALELED* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1904 369 Pfam Protein of unknown function (DUF1117) 246 359 IPR010543 -
Mtr4g1904 369 CDD RING-H2_RNF126_like 181 222 - -
Mtr4g1904 369 SUPERFAMILY RING/U-box 161 229 - -
Mtr4g1904 369 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 8 312 - -
Mtr4g1904 369 Pfam zinc-ribbon 11 42 IPR039525 GO:0061630
Mtr4g1904 369 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 147 228 IPR013083 -
Mtr4g1904 369 Pfam Ring finger domain 180 222 IPR001841 -
Mtr4g1904 369 MobiDBLite consensus disorder prediction 49 82 - -
Mtr4g1904 369 SMART ring_2 181 221 IPR001841 -
Mtr4g1904 369 ProSiteProfiles Zinc finger RING-type profile. 181 222 IPR001841 -
Mtr4g1904 369 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHC2A-RELATED 8 312 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g1904 Mtr-Chr4 32234936 32236626 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g1904 120 228 C3H Transcription Factor Family AT5G01980 49.541 5.59e-29 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g1904 - - gmx:100792874 491.115
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g1904 4 32234936 32236626 Mtr4g1904 4 32234936 32236626 ECH
Mtr2g3373 2 47804517 47806137 Mtr4g1904 4 32234936 32236626 ECH
Mtr7g1436 7 29114177 29116280 Mtr4g1904 4 32234936 32236626 ECH
Mtr2g3373 2 47804517 47806137 Mtr4g1904 4 32234936 32236626 PCT