Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1902 ATGAGTTTTGCTTTTCGAGGGAGTAGGGGAGATATTGAAAACGGATTTTCAGAATATGTTCCTGAGAGAACCTCAATGCGGGTTCGTCCATCTCGGCCAGTCCATAGCAATTGTCTAGTTTTTCTTTTTGCAGTTATTATGATATTCGTGATATTATACTCCCCTCAGATGTTATATTATTTTTTGCGCTGGATAATACTGTCGGTCTTTGTGATGGTTACAAGTCTGAGGGCGTATGCAATTTATCTGCATCTTCAATCACAGGCCAGGGCTCATGCTGCAGCAGCCTCTGGGTTACTTGGCCATGCTGAATTACGAGTTCGCGTGCCACCATCTATTGCATTTGCAACAGGAGGAAGATTGCAGGGACTTAGACTCCAGCTTGCACTTCTTGACCGAGATTTTAATGAGATAGATTATGACACTTTGAGAGTTCTTGCTTTTGGTACTCGTTCAATGTCTGAGGAGGAGATAAATGCCTTGCCTATTCACAAACATAAAGTTACTGGCCCAATAAAAGGTGGCTCCACCGGTTCGACATCCTCTTCTTCAGAGGCAGCTGAGATTAAGCAAGATTTCAAAGGAGAAGAGGGAAGTGCCAATGATCAAGAAGATGGGTTGACTTGTGCTATATGCTTGGACCAAGTTCAGAGGGGGGAACTTGTGCGTAGCTTGCCATGCTTGCATCAGTTTCATGCCAGCTGCATCGATCAATGGCTCCGGCGAAAACGAACATGTCCTGTATGCAAATTTAAGATTGGGGCGGGATGGCTAAGTAACAATGCGTGCGAGTCGGATGATTCAGATATTGTGTAG 816 0.4449 MSFAFRGSRGDIENGFSEYVPERTSMRVRPSRPVHSNCLVFLFAVIMIFVILYSPQMLYYFLRWIILSVFVMVTSLRAYAIYLHLQSQARAHAAAASGLLGHAELRVRVPPSIAFATGGRLQGLRLQLALLDRDFNEIDYDTLRVLAFGTRSMSEEEINALPIHKHKVTGPIKGGSTGSTSSSSEAAEIKQDFKGEEGSANDQEDGLTCAICLDQVQRGELVRSLPCLHQFHASCIDQWLRRKRTCPVCKFKIGAGWLSNNACESDDSDIV* 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1902 271 Pfam Ring finger domain 208 250 IPR001841 -
Mtr4g1902 271 SUPERFAMILY RING/U-box 202 254 - -
Mtr4g1902 271 CDD RING-H2_PA-TM-RING 208 250 - -
Mtr4g1902 271 MobiDBLite consensus disorder prediction 169 203 - -
Mtr4g1902 271 ProSiteProfiles Zinc finger RING-type profile. 209 250 IPR001841 -
Mtr4g1902 271 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 1 271 - -
Mtr4g1902 271 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 183 255 IPR013083 -
Mtr4g1902 271 SMART ring_2 209 249 IPR001841 -
Mtr4g1902 271 PANTHER TARGET OF ERK KINASE MPK-1 1 271 - -
Mtr4g1902 271 MobiDBLite consensus disorder prediction 173 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g1902 Mtr-Chr4 32223460 32226246 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g1902 1 271 C3H Transcription Factor Family AT3G55530 57.818 3.37e-103 300
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g1902 K16283 - gmx:100805406 319.316