Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1889 ATGGATCCAAACTTTCCTCCAGCTAGTGATTTCACAAACGGTTACTACCACTTTGGTGAAGAACGGAGTATATTGGTTTCTGAGTTTGATCCAAATCAATATGATAGCTACCTTGATGCTGATCCAAATCAATATGATAGCTTCCTTGGTGCTGATCCACTTGATTTTGCTGCTACCACCTTCCCTATAGAAGGTTGTATGGCCTCGGCGACAGATCCTTCGTTGGAAGACACTGATTTTTCAGATACTGGTAAGTTCATAAACCAAATTCTGATGGAAGAAAATGTTGACCAGAGACCGTTTTATGACCCACTTAGCTTACAAATGACAGAAAAATCATTCTATGATGCTCTTTTACACACAAATAAACCTCTTTCCCCTAATCAACACCCCTTAGATATTCATAACTCTGATGGCACAACCAGCAGCAACAGCAATAGCAATAGCAGCGTCGACGATTCTCGAGAGTCAAAACCCCTTTCACCTGATACTCCTGTTTCTGATCATGTTAATCATGTTTTTCAGTTTAATTCCCCTGCTGTTTCTCAGCCTCATTCTACTGGTGTTAGTAATGGGCTCAGAGATTTGGATTCTTCTATTACGCAGATGGCACAAAACATTTTCAGTGATGCAGATTCTGTTTCTCTATTCAATAAAAGTTTAGAAGAAGCCAACAAGTTTCTTCCTCCGCAGCCTCAACTCTTTACTGGTTTTGAGTCATCCAATTTGGATATAGCTAGGGAGGAAGAGAATCCGTTTGTGTTGAAGAGTAGAAAGAATCACAAGCGCGAAGAAAGTTTTAGTCAAGAACAAGAAGAAGAAGCTTGGAGAAGTAGCAAGCAATCAGCTATTAGTGCTGTTGATGAGGATGAATTATCAGAGATGTTTGATAAGGTTTTGCTTAATGTGGGACATATGCCACTATGCAATGAACATGATTGCCTGCAGAATGGACAAGTGAAAACGGAGGAGCTGCCTCCATCAAATGGAGCGAAGACTCGTCCTAAGAAACAAGGCAAGAAGAATGAAACAATAGATTTAAGGAATCTTCTGCTTATGTGTTCACAATCTGTGTATGCCAATGACAACAGGAATGCTAATGAGCTACTGAAGCAGATTAGGCAACATTCTTCACCCTCTGGGGATGGACCACAAAGGTTGGCTCATTACTTTGCCAATGGCCTTGAGGCACGCATTGTCGGCGACGGTACTAGAGCACAAACATTCTATTCCTCCCCGAGCACCAAGAGGATCTCTACTGCTGAGTTTTTGAAAGCATATCAAGTTCATCTATCTACTAGTCCTTTCAAAAAGTTTGCATACTTCTTTGCAAATAAAATGATTATGAAAGCTTCTGCAAATGCTGAAACCCTTCATATCATTGATTTTGGTATCCTATATGGTTTTCAGTGGCCAATACTTATAAAGTTTTTATCAGATAGAGAAGGTGGACCTCCAAACCTGAAGATCACCGGGATAGAGTTCCCTTTACCTGGTTTTCGTCCAATGGAAAAAATCGAAGAAACTGGTCGTCGTCTTGCCGACTACTGCAAGCGCTTCCATGTTCCCTTTGAGTTTAATGCCATACCATCGCGTTATTGGGAAACAATTCAAGTGGAGGATCTTAAAATCAAGAGCAATGAGGTTGTTGTTGTGAACTCTTTGATGAGATTTAAGAATTTATTGGATGAAAGTATTGAAGTGAACAGTCCTAGAAACGCGGTTCTGCATTTAATCAGAAAGATAAATCCTGCTATTTTTGTTCAGTCAATTGTTAATGGATCATATAATTCGCCATTCTTTGCTACACGGTTTAGGGAGGCACTGTTTCATTTTTCTGCTCTTTATGATATGTTTGACACTGTCATACCACGCGAAAACAAATACAGGATGCTGATGGAGAGGGAAAGTATAGGTAGAGAAGCTATGAACGTTGTAGCTTGTGAAGGTTTAGAGAGAGTTGAGAGGCCAGAGACATATAAACAGTGGCAGGTTAGGAATACAAGAGCTGGTTTCAAGCAGCTTCCATTGAATTCGGAATTAATGGACAAATTTAGGACAAAGTTACAGCAATGTTACCATAAAGATTTTGTTTTTGATGTAGACAACGATTGGATGCTTCAAGGTTGGAAAGGACGCATTTTATATGCTTCAACATGTTGGGTGCCGGCATAA 2175 0.4005 MDPNFPPASDFTNGYYHFGEERSILVSEFDPNQYDSYLDADPNQYDSFLGADPLDFAATTFPIEGCMASATDPSLEDTDFSDTGKFINQILMEENVDQRPFYDPLSLQMTEKSFYDALLHTNKPLSPNQHPLDIHNSDGTTSSNSNSNSSVDDSRESKPLSPDTPVSDHVNHVFQFNSPAVSQPHSTGVSNGLRDLDSSITQMAQNIFSDADSVSLFNKSLEEANKFLPPQPQLFTGFESSNLDIAREEENPFVLKSRKNHKREESFSQEQEEEAWRSSKQSAISAVDEDELSEMFDKVLLNVGHMPLCNEHDCLQNGQVKTEELPPSNGAKTRPKKQGKKNETIDLRNLLLMCSQSVYANDNRNANELLKQIRQHSSPSGDGPQRLAHYFANGLEARIVGDGTRAQTFYSSPSTKRISTAEFLKAYQVHLSTSPFKKFAYFFANKMIMKASANAETLHIIDFGILYGFQWPILIKFLSDREGGPPNLKITGIEFPLPGFRPMEKIEETGRRLADYCKRFHVPFEFNAIPSRYWETIQVEDLKIKSNEVVVVNSLMRFKNLLDESIEVNSPRNAVLHLIRKINPAIFVQSIVNGSYNSPFFATRFREALFHFSALYDMFDTVIPRENKYRMLMERESIGREAMNVVACEGLERVERPETYKQWQVRNTRAGFKQLPLNSELMDKFRTKLQQCYHKDFVFDVDNDWMLQGWKGRILYASTCWVPA* 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1889 724 MobiDBLite consensus disorder prediction 258 282 - -
Mtr4g1889 724 Pfam GRAS domain family 347 721 IPR005202 -
Mtr4g1889 724 MobiDBLite consensus disorder prediction 122 155 - -
Mtr4g1889 724 MobiDBLite consensus disorder prediction 321 342 - -
Mtr4g1889 724 ProSiteProfiles GRAS family profile. 338 722 IPR005202 -
Mtr4g1889 724 MobiDBLite consensus disorder prediction 258 277 - -
Mtr4g1889 724 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 62 723 - -
Mtr4g1889 724 MobiDBLite consensus disorder prediction 121 170 - -
Mtr4g1889 724 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 62 723 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g1889 Mtr-Chr4 32049243 32052219 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g1889 85 724 GRAS Transcription Factor Family AT1G07530 47.557 0.0 587
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Mtr4g1889 GRAS 7.5e-111 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g1889 - - adu:107476834 843.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g1889 4 32049243 32052219 Mtr4g1889 4 32049243 32052219 ECH
Mtr2g3363 2 47703402 47706327 Mtr4g1889 4 32049243 32052219 ECH
Mtr2g3361 2 47676762 47678893 Mtr4g1889 4 32049243 32052219 PCT