Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1888 ATGGATCCAAACTGTGATGAGTTTCAACAATATGAGAAACCTATAGAAGGTTATATGGCTTCAGTGACAGATTCTTCCATGGAAGACACTGATTTTTCAGAAACCATAAAGTTCATAACTCAAATCCTCATGGAAGAAAACGTTGACCAGAGACCTTTTTATGATCCACTTAGCTTACAAATCACAGAAAAATCATTCCATGATGCTCTTTCACCTAATGGCACAACCAGCACCAGTTGCAATAGTAATAGTAACAGCAGCATCGACGATTCTCACGAGTCGAAACCCTTTTCACCTGATACTCCTGTTTCTGATCTTGTTAATCATGGTTTTCAGTTTAATTCCTGTGCTTCAAGTAGTGTTAGTGATGGACCCATAAATTTCGATTCATCTATTACCAATATGTTGGCAGAGAACATTTTCAGTAATGCAGATTCTGTTTCTCAATTCAATAGAGGTTTTGAAGAAGCCAACAAGTTTCTTCCTCCTCAGCCTCAACTCTTGACTGGTTTAGAATCATCCAATTTCAATATGATGAAGAGTAGAAAGAATCACGGGCGCGAAGAAGAAGAAGGGAGTAGTAACAAGCAATCGGCTATTAGTGTTGTTGATGAGGATGAATTATCAGAAATGTTTGATAAAGCTTTGCTTAATGTGGACCGTGAACCTTTGCAGAATGAGCAACCACCTTCATCTAATGAAGGAAAGGTTCGTCCGAAGAAACGTGATAGCAAAAACAAAACGATAGACTTAAGGAATCTTCTGCTTATGTGTTCACAAGCTATGTATGCCAATGACAATAGAAATGCTAATGATCTTTTAAAGCAGATTAGGCAACATTCTTCACCCTTTGGAGATGCATCACAAAGGGTGGCTCATTACTTTGCCAATGGCCTTGAGGCTCGCCTTGTAGGCGATAGAGCTGGTGCACAAACATTCTATTCCTCGCCGAGCACTAAGAGAATTACTGCTGCTGAGTTTTTGAAAGCATATCAAGTTCATTTTACTAGCCCTCCATTCAAGAAATTTGCATATTTGTTTGGAAATGAAATGATTATGAAAGTTGCTGCAAAAGCTGAAACCCTTCATATCATTGATTTTGGTGTCCTTTATGGTTTTCAGTGGCCAATGCTTATTAAGTTTCTATCAAATAGAGAAGGTGGACCGCCAAAACTGAGGATCACTGGGATAGAGTTCCCCTTACCAGGCTTTCGCCCGACAGAAAGAATCGAGGAGACCGGTCGTCGACTTGCTAACTATTGCAAGCGTTTCAATGTTCCTTTCGAGTACAATGCCCTAGCATCGCGGAAATGGGAAACAATTCGAGTTGAAGATCTTAAAATCAAGAGCAACGAGGTAGTTGCTGTGAACTGTGTGGGGAGGTTTAAGAATTTACTAGATGAGAGTATTGAAGTTAATAGTCCTAGAAACGTGGTTCTGCATTTGATTAGGAAGATAAATCCGGATATTTTCGCTCTGTCTATTATTAATGGATCATATAATTCACCTTTCTTTGCGACAAGGTTTAGGGAGGCACTGTTTAATTTTTCTGCTATTTATGATATGTTGGACGCCGTCATACCGAAGGGAAGTGAATGGAGGAGGATGATTGAGAGGGAAATTATGGGTAGGGAAGTTATGAATGTTGTAGCATGTGAAGGTTTAGAAAGAGTTGAAAGGCCAGAGACATATAAACAATGGCAGGTTAGAAATACAAGAGCTGGTTTCAAGCAACTTCCATTGGACTCGCAATTAATGGAGAAATTTAGGACTAAGTTAAAGCAATGGTACCATAGAGATTTTGTATTTGATGAAGACAGCAAATGGATGCTTCAAGGTTGGAAAGGTCGTATTTTATATGCTTCAACTTGTTTGGTGCCGGCATAA 1887 0.3927 MDPNCDEFQQYEKPIEGYMASVTDSSMEDTDFSETIKFITQILMEENVDQRPFYDPLSLQITEKSFHDALSPNGTTSTSCNSNSNSSIDDSHESKPFSPDTPVSDLVNHGFQFNSCASSSVSDGPINFDSSITNMLAENIFSNADSVSQFNRGFEEANKFLPPQPQLLTGLESSNFNMMKSRKNHGREEEEGSSNKQSAISVVDEDELSEMFDKALLNVDREPLQNEQPPSSNEGKVRPKKRDSKNKTIDLRNLLLMCSQAMYANDNRNANDLLKQIRQHSSPFGDASQRVAHYFANGLEARLVGDRAGAQTFYSSPSTKRITAAEFLKAYQVHFTSPPFKKFAYLFGNEMIMKVAAKAETLHIIDFGVLYGFQWPMLIKFLSNREGGPPKLRITGIEFPLPGFRPTERIEETGRRLANYCKRFNVPFEYNALASRKWETIRVEDLKIKSNEVVAVNCVGRFKNLLDESIEVNSPRNVVLHLIRKINPDIFALSIINGSYNSPFFATRFREALFNFSAIYDMLDAVIPKGSEWRRMIEREIMGREVMNVVACEGLERVERPETYKQWQVRNTRAGFKQLPLDSQLMEKFRTKLKQWYHRDFVFDEDSKWMLQGWKGRILYASTCLVPA* 629
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1888 628 MobiDBLite consensus disorder prediction 219 245 - -
Mtr4g1888 628 MobiDBLite consensus disorder prediction 181 203 - -
Mtr4g1888 628 ProSiteProfiles GRAS family profile. 242 626 IPR005202 -
Mtr4g1888 628 MobiDBLite consensus disorder prediction 68 92 - -
Mtr4g1888 628 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 15 627 IPR005202 -
Mtr4g1888 628 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 15 627 - -
Mtr4g1888 628 MobiDBLite consensus disorder prediction 68 103 - -
Mtr4g1888 628 Pfam GRAS domain family 251 623 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g1888 Mtr-Chr4 32041665 32044181 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g1888 35 628 GRAS Transcription Factor Family AT1G07530 44.993 0.0 557
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Mtr4g1888 GRAS 2.5e-108 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g1888 - - gmx:100795855 803.127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g1888 4 32041665 32044181 Mtr4g1888 4 32041665 32044181 ECH
Mtr7g1424 7 29005514 29008687 Mtr4g1888 4 32041665 32044181 ECH