Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1875 ATGGGAATTAATATTGTTTCTGCCATGGGAGTTTGTTTGGGCAACCAAATCAAAGCCGAAGGCCCGATTAATTCCGTTTCAGGGTTGAGTTCAAAGAGTGTAAATGATGATACAGAAAATGTTGGTAGCCCATGTTGCAAGGTTTCTGATGAACTCATTAGCTCAAGTAATGCGGGAGTGATCTTGCAATCGTCCAATTTGAAGAACTTTGCTTTGACAGAAATTCAGGCTGCTACGAGAAATTTCCGTGTAGACAGTGTGTTAGGAGATGGTGATTTTGGATCAGTTTTTAAGGGTTGGATTGATGAACGTTCATCTTCTGCTGCCAAACCTGGCACAGGCATTACTGTTGCTGTCAAAAGACTTAACCAGGATGGCCTCAAAGGTCACAATGAGTTGTTGGCTGATGTGAACTATCTAGGCCAGCTTTCCCATCCTCATCTAGTGAAATTGATTGGTTATTGCCTAGAAGAGGAAAACAAAATTCTGGTCTATGAATTTATGCCTCGTGGCACCTTGGAGAATCACTTGTTCATCAGAGGCTCATATTTTCAACCTCTTTCTTGGAGCCTCCGGTTGAAGGTTGCTGTTGGTGCTGCCAAAGGCCTTGCATTTCTTCACGGTGCTCAAACAAAAGCGATGTACCGTGATTTCAAGACTTCAAATGTCTTGCTAGATTCCAATTATAATGCAAAACTTTCTAATTTTGGCCTGGCAAAGGACTTGTCCACGGTTGATAAAAGTCATGTCACCACCAAGCTAACCTACGGATATGCGGCTCCAGAATACTTAGCCACCGGTAATCACACTGCTAAAAGTGTTGTGTATAGTTTTGGAGTTGTGCTATTGGAAATGTTATCGGGGAGGAGAGTTGTCGACAAGAACAGGCCACAAAGACAACACAATTTGGTGGAATGGGCTAAGCCATATCTATCCAACAAGCGTAAGATTTTGCGCGTGTTGGATAGCCGTCTTGAGGGCCAATATGAATTAGAAGATATTTATAAGGTTGCTACACTCTCCCTAAGGTGCCTTTCTGTAGAAGCCAAGTTGAGACCAAACATGGATGAGGTTGTTACAAATTTGGAGCAGTTGCAGGTTCCTCATGTAAATGAAAGCAACAAGAATCGTTTGCGTAGAAGAAGTGCTGGTGATGTTACCCATGTTAGAACAGCCGCATCAGCTTTTCCCCAACGTTCTTCTTCTATGTTATGTACATGA 1221 0.4259 MGINIVSAMGVCLGNQIKAEGPINSVSGLSSKSVNDDTENVGSPCCKVSDELISSSNAGVILQSSNLKNFALTEIQAATRNFRVDSVLGDGDFGSVFKGWIDERSSSAAKPGTGITVAVKRLNQDGLKGHNELLADVNYLGQLSHPHLVKLIGYCLEEENKILVYEFMPRGTLENHLFIRGSYFQPLSWSLRLKVAVGAAKGLAFLHGAQTKAMYRDFKTSNVLLDSNYNAKLSNFGLAKDLSTVDKSHVTTKLTYGYAAPEYLATGNHTAKSVVYSFGVVLLEMLSGRRVVDKNRPQRQHNLVEWAKPYLSNKRKILRVLDSRLEGQYELEDIYKVATLSLRCLSVEAKLRPNMDEVVTNLEQLQVPHVNESNKNRLRRRSAGDVTHVRTAASAFPQRSSSMLCT* 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1875 406 SUPERFAMILY Protein kinase-like (PK-like) 59 368 IPR011009 -
Mtr4g1875 406 Pfam Protein tyrosine and serine/threonine kinase 84 362 IPR001245 GO:0004672|GO:0006468
Mtr4g1875 406 Gene3D Transferase(Phosphotransferase) domain 1 168 387 - -
Mtr4g1875 406 PANTHER OS01G0588500 PROTEIN-RELATED 36 381 - -
Mtr4g1875 406 ProSitePatterns Protein kinases ATP-binding region signature. 88 120 IPR017441 GO:0005524
Mtr4g1875 406 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL11-RELATED 36 381 - -
Mtr4g1875 406 ProSiteProfiles Protein kinase domain profile. 82 365 IPR000719 GO:0004672|GO:0005524|GO:0006468
Mtr4g1875 406 Gene3D Phosphorylase Kinase; domain 1 45 167 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g1875 Mtr-Chr4 31956299 31959110 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g1875 68 372 Glycoside Hydrolase AT3G07070 43.354 3.12e-87 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Mtr4g1875 PK_Tyr_Ser-Thr 1.3e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g1875 - - mtr:MTR_4g063930 802.357