Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1870 ATGGTAAAATGTCCTGATCCAAAATGCAATGATATTTTGGAGCCTCATGATTGTAGTTCAATTTTACCAAAGGATGTGTTTGATAGATGGGAAAATTCACTTTGTGAGAATATGGTGTTAGGTTCACAGAAATTTTATTGTCCTTTTAATGATTGTTCAGCTATGTTGTTGAATGATGAAAAGGGAATTGTGACTGCTTCGGAATGTCCACATTGTCATAGATTGTTCTGTGCACAATGTAAGGTTTCATGGCACACAGGTGTTGATTGTAAAGTGTTTCAAAGCTTGAAAGACGGCGAGCGAGGGATGGAAGATCTAATGGCCATGGAACTTGCAAAGAACAAGAGATGGAAAAGATGTCCAAAGTGTGGCTTCTATGTGGAAAAAATTGTGGGATGTACTCGCATTTCATGCAGGTGTGGCAATCAATTTTGCTATGGCTGTGGTTCTCCTTGGAATAATCAGTCCCATTATGCATGTCCAACTCAATGA 492 0.3882 MVKCPDPKCNDILEPHDCSSILPKDVFDRWENSLCENMVLGSQKFYCPFNDCSAMLLNDEKGIVTASECPHCHRLFCAQCKVSWHTGVDCKVFQSLKDGERGMEDLMAMELAKNKRWKRCPKCGFYVEKIVGCTRISCRCGNQFCYGCGSPWNNQSHYACPTQ* 164
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1870 163 SMART ibrneu5 28 90 IPR002867 -
Mtr4g1870 163 SMART ibrneu5 100 160 IPR002867 -
Mtr4g1870 163 ProSiteProfiles TRIAD supradomain profile. 1 163 IPR044066 -
Mtr4g1870 163 SUPERFAMILY RING/U-box 101 160 - -
Mtr4g1870 163 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 1 162 IPR031127 GO:0004842|GO:0016567
Mtr4g1870 163 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 1 162 - -
Mtr4g1870 163 Gene3D - 87 163 - -
Mtr4g1870 163 SUPERFAMILY RING/U-box 37 94 - -
Mtr4g1870 163 Pfam IBR domain, a half RING-finger domain 30 90 IPR002867 -
Mtr4g1870 163 Pfam IBR domain, a half RING-finger domain 110 155 IPR002867 -
Mtr4g1870 163 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 41 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g1870 Mtr-Chr4 31845935 31847702 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g1870 4 151 C3H Transcription Factor Family AT2G19610 28.931 7.78e-15 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g1870 K11975 - gmx:100815626 274.248