Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1869 ATGGAGGGAACTTCATCATCTCCTACAACAGACAATGAAACTTTACTTGATGATTTCGACTCTTTAGCCCTTCATGCTGAAGAGATATTTCCATTATTTGACGAGGAATATGCAGATGAAATACAATTACCTGCGGTGCATGCAAATGTTGATACTGAAACTAACCTCAAACCTGTTGAATCTAAACCTGCTGCAGAAATGTTCGAAAACCAAAACTGTTCACACTCTTTCTGTGAAGGATGTGTTGGAAGTTATCTAGCTGCAAAAATTCAAGAGAATATAGCAATGGTAAAATGTCCTTATCCAAATTGCAATGGTATATTGGAGCCTCATAATTGTAGCACCCTTATACCAAAGGATGTGTTTGAGAGATGGGGAAAGGCACTTTGTGAGAATATGGTGTTAGATTCACAAAAATTGTACTGTCCTTTTAATGATTGTTCAGCTATGTTGGTGAATGATGAAGAGGAAGTTGTAACCGTTTCTGAGTGTCCTCATTGTAATAGATTATTTTGTGCACAATGTAAGGTTTCATGGCACTCTGGTGTTGATTGTAGAGAGTTTCAAAGCTTGGAAGATGGCGAGCGAGGGAGGAAAGATCTAATGGCCATGGAACTTGCTAAGAACAAGAGATGGAAAAGATGTCCAAAGTGCAGCTTCTATGTGGAGAAAATTGAGGGATGTACTCGCATTTCATGCAGGTGTGGTAATCAATTTTGCTATGGATGTGGATCCACTTGGAATACTGACTCCCATTATAAGTGTGCAACTGGATAG 777 0.39 MEGTSSSPTTDNETLLDDFDSLALHAEEIFPLFDEEYADEIQLPAVHANVDTETNLKPVESKPAAEMFENQNCSHSFCEGCVGSYLAAKIQENIAMVKCPYPNCNGILEPHNCSTLIPKDVFERWGKALCENMVLDSQKLYCPFNDCSAMLVNDEEEVVTVSECPHCNRLFCAQCKVSWHSGVDCREFQSLEDGERGRKDLMAMELAKNKRWKRCPKCSFYVEKIEGCTRISCRCGNQFCYGCGSTWNTDSHYKCATG* 259
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1869 258 ProSitePatterns Zinc finger RING-type signature. 73 82 IPR017907 -
Mtr4g1869 258 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 59 256 IPR031127 GO:0004842|GO:0016567
Mtr4g1869 258 Gene3D - 140 186 - -
Mtr4g1869 258 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 58 136 IPR013083 -
Mtr4g1869 258 Pfam IBR domain, a half RING-finger domain 127 185 IPR002867 -
Mtr4g1869 258 Pfam IBR domain, a half RING-finger domain 204 250 IPR002867 -
Mtr4g1869 258 ProSiteProfiles TRIAD supradomain profile. 44 258 IPR044066 -
Mtr4g1869 258 SUPERFAMILY RING/U-box 196 255 - -
Mtr4g1869 258 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 59 256 - -
Mtr4g1869 258 SMART ibrneu5 195 255 IPR002867 -
Mtr4g1869 258 SMART ibrneu5 123 185 IPR002867 -
Mtr4g1869 258 SUPERFAMILY RING/U-box 129 189 - -
Mtr4g1869 258 Gene3D - 187 257 - -
Mtr4g1869 258 SUPERFAMILY RING/U-box 61 132 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g1869 Mtr-Chr4 31842148 31843100 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g1869 66 245 C3H Transcription Factor Family AT2G19610 28.497 1.78e-20 88.2