Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1868 ATGGAGGGAACTTCACCATCCTCTACAGCAGATGATTTCTACTTCTCAGCCATTCATGATAAAGAAATTTTTCGAATATCTGAAGAGACATATGCAGAGGAATTACAAATACAAGAAGCATTATTATTTTCCACTCTTATGTCAAATACTACTATAGATGTAAAAAATGAAATCCAAGTAGTGGATGCAAAAGTTGATCTCAAACAGAAGCAGAAAGAGGCTTTTGTAGGTGAATCTTCTTCGTCTTCTTCTCAGTTGAAACAATCCTACTGTGCTATTTGTATGGAAGCTAAACCCGTTGAAGAAATGTTCCAGAACCAAAAATGTTCACATTCTTTCTGTGAAGATTGTCTTGGAAGATATCTAGCTGCAAAAATTCAAGAGAGTATATCAATGGTAAAATGTCCTGATCCAAAATGCAATGATATTTTGGAGCCTCATGATTGTTGTTCAATTTTACCAAAGGATGTGTTTGATAGATGGGAAAATGCACTTTGTGAGAATATGGTGTTAGGTTCACAGAAATTTTATTGTCCTTTTAATGATTGTTCAGCTATGTTGTTGAATGATGAAAAGGGAATTGTGACTGCTTCGGAATGTCCACATTGTCATAGATTGTTCTGTGCACAATGTAAGGTTTCATGGCACATAGGTGTTGATTGTAAAGAGTTTCTAAGCTTGAAAGATGGTGAGCGAGGGAGGGAAGATCTAATGGCCATGGAACTTGCTAAGAACAAGAGATGGAAAAGATGTCCAAAGTGTGGCTTCTATGTGGAAAAAATTGTGGGTCTCTTTGCTATGTTAGGTGACATAGATTTTCAATGCGTTTTTGTTTTGTAA 840 0.3595 MEGTSPSSTADDFYFSAIHDKEIFRISEETYAEELQIQEALLFSTLMSNTTIDVKNEIQVVDAKVDLKQKQKEAFVGESSSSSSQLKQSYCAICMEAKPVEEMFQNQKCSHSFCEDCLGRYLAAKIQESISMVKCPDPKCNDILEPHDCCSILPKDVFDRWENALCENMVLGSQKFYCPFNDCSAMLLNDEKGIVTASECPHCHRLFCAQCKVSWHIGVDCKEFLSLKDGERGREDLMAMELAKNKRWKRCPKCGFYVEKIVGLFAMLGDIDFQCVFVL* 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1868 279 ProSiteProfiles Zinc finger RING-type profile. 91 139 IPR001841 -
Mtr4g1868 279 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 85 172 IPR013083 -
Mtr4g1868 279 ProSiteProfiles TRIAD supradomain profile. 87 279 IPR044066 -
Mtr4g1868 279 SMART ibrneu5 159 221 IPR002867 -
Mtr4g1868 279 SUPERFAMILY RING/U-box 232 265 - -
Mtr4g1868 279 Pfam IBR domain, a half RING-finger domain 160 221 IPR002867 -
Mtr4g1868 279 ProSitePatterns Zinc finger RING-type signature. 109 118 IPR017907 -
Mtr4g1868 279 SUPERFAMILY RING/U-box 167 224 - -
Mtr4g1868 279 PANTHER RBR-TYPE E3 UBIQUITIN TRANSFERASE 11 268 - -
Mtr4g1868 279 SUPERFAMILY RING/U-box 88 168 - -
Mtr4g1868 279 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 11 268 IPR031127 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g1868 Mtr-Chr4 31839961 31841038 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g1868 62 263 C3H Transcription Factor Family AT2G19610 23.113 1.55e-11 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g1868 K11975 - gmx:100816161 351.288