Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1867 ATGGAAGGTGAAAAAGTAAACGTGGTGATTGATTTGGTGAACGAGATAGCGAACATCTCAGACTTCAGACCTATGGTGAAAAAGCAATATTGTAACTTAGCACGAAGGTTGAAGCTGTTGATTCCTTTGTTTGAGGAAATTAGAGATATGAAAGATTCGATTCCGAATGATACTTCAAAAGCGTTGGTTTTGTTTAAAGATGCTCTTGATTCAGCTAAGGAACTTCTCAGATTTGGTTGTGAAGGAAGCAAGATTTATATGGTCCTTGAGAGGGACCGGATCATGAATAATTTCTATGAGGTGACAGCTCGGTTGGAACAATCACTGGATGGAATTTCCTATGATAAACTTGACATATCAGATGAAGTTAAAGAGCAGGTTGAACTGGTTCTTACTCAGTTCAGAAGAGCCAAAGGGAGAGTTGATGAACCGGATGCCAAGTTGTATGAAGATATGTCATTTCTTTACAACAATAGCAGTGATGCAGCTATAGATCCAGCTGTGCTAAGTCAATTAGCAGACAAATTGCAATTGATGGGAATAGCCGATCTTACACAAGAATCACTCGCTTTGCATGAGATGGTGGCAGTAAGTGGTGGGGATCCAGGGGCGCGCATTGAGAAGATGTCAATGTTATTGAAGAAGATAAAGGATCACGTGCAAATAGAAAACCTAGTGAAGGATGATACCAAAACAGCAAAAGGCGTTTCTGCAGGATTTTACGAACTAGGGGAAAATGACGCGAATCATCAAGCCCCTGCTATTCCCAGTGATTTTAAATGTCCGATTTCCTTGGAATTGATGATGGATCCTGTCATTGTTTCAACAGGACAGACTTATGAGCGTTCTTGTATTGAGAAGTGGTTGCAAGACGGGCATGGGACGTGCCCAAAAACACAGCAGAGTCTTACCAGTACTGTTCTCACACCCAACTATGTCTTACGAAGCCTGATAGAACAATGGTGTGAAGCCAATGGCATAGAGCCACCAAAACGACCCAGCACTTCTGAGCCGAGTAAATCAGCATCAGCCTGCACCCCAGCTGAGCGAAGTAAGATTGAAAGTCTTATCCAAAAGCTCACATCCGGAGGTCCCGAAGACCAGAGATCAGCTGCCGGAGAGATCCGGCTTCTAGCAAAACGCAATGCAGATAACCGTGTAGCTATTGCTGAAGCTGGTGCAATCCCTCTCCTTGTTGGTCTCCTCTCCGTGCCAGACTCTCGAACTCAAGAGCATGCTGTTACAGCACTTCTGAATCTCTCAATATATGAGAGTAACAAAGGAAGCATTGTTTCTTCCGGAGCAGTTCCAGGCATAGTTCATGTGCTGAAAAGGGGAAGCATGGAAGCTCGGGAAAACGCAGCAGCAACACTTTTCAGCCTTTCAGTTATCGATGAAAATAAGGTTACAATTGGTTCTTCAGGAGCGATATCGCCGCTGGTGACACTGCTGAGTGAGGGTACCCAAAGGGGTAAGAAAGATGCTGCAACTGCACTCTTCAATTTGTGCATTTATCAGGGAAACAAGGGAAAAGCAGTGAGGGCCGGTGTTATTCCGACGCTGATGCGATTGCTGACAGAACCTAGCGGGGGAATGGTGGATGAAGCATTGGCAATTTTGGCAATTTTGGCTAGTCATCCTGAAGGGAAAGCTGCCATTGGTGCTGCAGAGGCAGTGCCGGTTTTGGTAAAGTTTATCGGGAATGGATCCCCAAGGAACAAAGAGAACGCAGCCGCGGTTTTAGTGCACCTTTGTTCTGGAGATCGACAATATATAGCACAGGCACAAGAGCTAGGGGTGATGGCTCCATTGTTGGAATTGGCTCAAAATGGCACGGACAGAGGCAAAAGAAAGGCAACACAATTGATAGAGCGTATGAGCAGGATCCGTGAGCAGGAGCAGCATGAAGTTCCGACACAAACTGAACTTCAAGCTCAGAACGATGATATCCATCCACCTTTGATCATTAACCTCGATATTGACACCTAA 1989 0.45 MEGEKVNVVIDLVNEIANISDFRPMVKKQYCNLARRLKLLIPLFEEIRDMKDSIPNDTSKALVLFKDALDSAKELLRFGCEGSKIYMVLERDRIMNNFYEVTARLEQSLDGISYDKLDISDEVKEQVELVLTQFRRAKGRVDEPDAKLYEDMSFLYNNSSDAAIDPAVLSQLADKLQLMGIADLTQESLALHEMVAVSGGDPGARIEKMSMLLKKIKDHVQIENLVKDDTKTAKGVSAGFYELGENDANHQAPAIPSDFKCPISLELMMDPVIVSTGQTYERSCIEKWLQDGHGTCPKTQQSLTSTVLTPNYVLRSLIEQWCEANGIEPPKRPSTSEPSKSASACTPAERSKIESLIQKLTSGGPEDQRSAAGEIRLLAKRNADNRVAIAEAGAIPLLVGLLSVPDSRTQEHAVTALLNLSIYESNKGSIVSSGAVPGIVHVLKRGSMEARENAAATLFSLSVIDENKVTIGSSGAISPLVTLLSEGTQRGKKDAATALFNLCIYQGNKGKAVRAGVIPTLMRLLTEPSGGMVDEALAILAILASHPEGKAAIGAAEAVPVLVKFIGNGSPRNKENAAAVLVHLCSGDRQYIAQAQELGVMAPLLELAQNGTDRGKRKATQLIERMSRIREQEQHEVPTQTELQAQNDDIHPPLIINLDIDT* 663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1867 662 MobiDBLite consensus disorder prediction 328 348 - -
Mtr4g1867 662 Pfam Armadillo/beta-catenin-like repeat 465 503 IPR000225 GO:0005515
Mtr4g1867 662 Pfam Armadillo/beta-catenin-like repeat 547 586 IPR000225 GO:0005515
Mtr4g1867 662 Pfam Armadillo/beta-catenin-like repeat 382 421 IPR000225 GO:0005515
Mtr4g1867 662 Pfam U-box domain 255 325 IPR003613 GO:0004842|GO:0016567
Mtr4g1867 662 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 516 558 IPR000225 GO:0005515
Mtr4g1867 662 ProSiteProfiles U-box domain profile. 254 328 IPR003613 GO:0004842|GO:0016567
Mtr4g1867 662 CDD RING-Ubox_PUB 259 301 IPR045210 -
Mtr4g1867 662 PANTHER U BOX DOMAIN-CONTAINING 5 643 - -
Mtr4g1867 662 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 393 435 IPR000225 GO:0005515
Mtr4g1867 662 SMART Ubox_2 258 321 IPR003613 GO:0004842|GO:0016567
Mtr4g1867 662 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 5 643 - -
Mtr4g1867 662 Gene3D - 338 648 IPR011989 -
Mtr4g1867 662 SMART arm_5 505 545 IPR000225 GO:0005515
Mtr4g1867 662 SMART arm_5 423 463 IPR000225 GO:0005515
Mtr4g1867 662 SMART arm_5 588 628 IPR000225 GO:0005515
Mtr4g1867 662 SMART arm_5 464 504 IPR000225 GO:0005515
Mtr4g1867 662 SMART arm_5 382 422 IPR000225 GO:0005515
Mtr4g1867 662 SMART arm_5 546 586 IPR000225 GO:0005515
Mtr4g1867 662 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 252 328 IPR013083 -
Mtr4g1867 662 SUPERFAMILY RING/U-box 244 331 - -
Mtr4g1867 662 MobiDBLite consensus disorder prediction 332 348 - -
Mtr4g1867 662 Gene3D - 3 114 IPR036537 GO:0007166
Mtr4g1867 662 SUPERFAMILY ARM repeat 353 632 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g1867 Mtr-Chr4 31825592 31830660 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g1867 1 652 U-box Gene Family AT3G46510 67.634 0.0 878
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g1867 - - gmx:100812160 1087.79
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g1867 4 31825592 31830660 Mtr4g1867 4 31825592 31830660 ECH