Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1866 ATGACCAGAAATAAGGTGAAACTAGCATACATAACAGGTGACTCGAAGAGGAGTATAACATTCAGAAAGAGGAAAAATGGAATTATGAAGAAGATTAATGAAATTAGCACCCTATGCGGAGTAGAAGCATGTGCAATAATTTCAGAGCAAAACAGCCCTCAAGTAGAGGTTTGGCCATCAGATTCAGGGGTCAGAAGTGTGATATCTAGGTTTAGGAGTTTGCCTGGAGTTGAACAAAGTAAAAAGATGGTGGATCAGGAGGTCTTCTTGAGGCAAACCATTGGGAAAGTCTACGGGCAGTTGAAGAAGCAAAGGTTGGAAACCAGAAAGAAGGAAATGACCAATATCATTGATCATTATATTCAAACCGTAGAATTTAATGGAAATTCAATGAGCAAATATGATCTTAATGATTTTTCATCTTTTATTGATGAGAATTTGAAGGAGGTTGATCGGAAGATGAAAGAAATGACAATTAAAGATCAAGACGAGGTTGGAAATGAGGTGGGATTATGA 516 0.374 MTRNKVKLAYITGDSKRSITFRKRKNGIMKKINEISTLCGVEACAIISEQNSPQVEVWPSDSGVRSVISRFRSLPGVEQSKKMVDQEVFLRQTIGKVYGQLKKQRLETRKKEMTNIIDHYIQTVEFNGNSMSKYDLNDFSSFIDENLKEVDRKMKEMTIKDQDEVGNEVGL* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1866 171 SUPERFAMILY SRF-like 2 94 IPR036879 GO:0003677|GO:0046983
Mtr4g1866 171 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Mtr4g1866 171 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Mtr4g1866 171 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Mtr4g1866 171 PANTHER MADS BOX PROTEIN 2 159 - -
Mtr4g1866 171 ProSiteProfiles MADS-box domain profile. 1 47 IPR002100 GO:0003677|GO:0046983
Mtr4g1866 171 CDD MADS_SRF_like 2 85 IPR033897 GO:0000981|GO:0000987|GO:0045944
Mtr4g1866 171 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 50 IPR002100 GO:0003677|GO:0046983
Mtr4g1866 171 PANTHER MADS-BOX TRANSCRIPTION FACTOR FAMILY PROTEIN 2 159 - -
Mtr4g1866 171 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Mtr4g1866 171 Gene3D - 14 94 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g1866 Mtr-Chr4 31820495 31821502 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g1866 1 155 Type I MADS-box Gene Family AT5G48670 50.955 1.36e-39 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Mtr4g1866 SRF-TF 1.9e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mtr4g1866 - - mtr:MTR_3g465410 253.447