Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mtr4g1865 ATGGTTTTCTCTTCTATTCAAGGTTATGTAGATCCTCCTAATTGGCACCACCAGCAACCAAATCATCAGCAAGCAAATGGAAGTGATAACACTCAACTTCTTCCACCTTTACCACCTCAAGTGGGAGGTAGTACTACTGGTGGTGGTACTATGGGCTCGATCAGGCCCGGCTCCATGGCTGATCGAGCTCGTTTAGCAAAACTACCACCACCTGAACCAGCACTAAAGTGTCCTCGTTGCGATTCAACCAACACTAAATTTTGCTACTTCAACAACTACAGCCTCACTCAACCTCGTCACTTCTGCAAGACATGTAGGCGTTATTGGACAAGAGGGGGTGCACTTAGAAATGTTCCAGTTGGTGGAGGGTGTCGTAGAAACAACAAGAAAAACAAAAGAAGCCGTTCAAAATCTCCTAATTCAACAAATTCTCAAGAAAAACAAACTTCCTCATCAAGTGCAATCCCTTCTCATCATGAACTAATTGGTCATCAGCTACCACAAACAATTCCTAATCTACCTTTCATGGCCTCGATGCAGAATCTGAATCGTTATGTTGTTGGAAACGTTAACATGGGTCTTGGTTTGCGTGAGATCCAAGAACAACAACAACAACAAGATCATATGGGGTTTCAAATTGGTATTGGTAATGGTAACTCAACTTCTGTTTCTGTTTCTGCTTCTTCTGTTGCTGGAGGTGTCGGAGTTGAACCATGGCGTAATTTGCAGCAATTTCCTTTCTTGAATACTTTCGAATCAAACTCTTCTGGAAATAATCCATATACTTTTCAAGGAGAAAGTAATATTGAAGCTGCTGCAGCATCTGGATTTGTTAGAGATATAGCTTCAAACTCTAGGGCTAATCAAGAGCCACCGGTTAAAATGGAAGAAAATCGAGCTTTAAATTTTTCAAGAACATCTCTTGGTGTCTCTGAACATAATAACCAACAACAATACTATTCTTGGAATGATTTATCAGGCTCTTCAAGTACTCATATCTTGTAA 1005 0.407 MVFSSIQGYVDPPNWHHQQPNHQQANGSDNTQLLPPLPPQVGGSTTGGGTMGSIRPGSMADRARLAKLPPPEPALKCPRCDSTNTKFCYFNNYSLTQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNNKKNKRSRSKSPNSTNSQEKQTSSSSAIPSHHELIGHQLPQTIPNLPFMASMQNLNRYVVGNVNMGLGLREIQEQQQQQDHMGFQIGIGNGNSTSVSVSASSVAGGVGVEPWRNLQQFPFLNTFESNSSGNNPYTFQGESNIEAAAASGFVRDIASNSRANQEPPVKMEENRALNFSRTSLGVSEHNNQQQYYSWNDLSGSSSTHIL* 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mtr4g1865 334 MobiDBLite consensus disorder prediction 10 57 - -
Mtr4g1865 334 MobiDBLite consensus disorder prediction 137 156 - -
Mtr4g1865 334 MobiDBLite consensus disorder prediction 11 52 - -
Mtr4g1865 334 ProSiteProfiles Zinc finger Dof-type profile. 75 129 IPR003851 GO:0003677|GO:0006355
Mtr4g1865 334 ProSitePatterns Zinc finger Dof-type signature. 77 113 IPR003851 GO:0003677|GO:0006355
Mtr4g1865 334 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 5 331 IPR045174 GO:0003700|GO:0006355
Mtr4g1865 334 Pfam Dof domain, zinc finger 74 129 IPR003851 GO:0003677|GO:0006355
Mtr4g1865 334 MobiDBLite consensus disorder prediction 116 156 - -
Mtr4g1865 334 PANTHER DOF ZINC FINGER PROTEIN DOF3.6 5 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Mtr4g1865 Mtr-Chr4 31808583 31810316 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Mtr4g1865 57 329 C2C2-Dof Transcription Factor Family AT1G07640 41.577 7.17e-49 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Mtr4g1865 zf-Dof 1.2e-31 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Mtr4g1865 4 31808583 31810316 Mtr4g1865 4 31808583 31810316 ECH
Mtr2g3335 2 47440054 47441924 Mtr4g1865 4 31808583 31810316 PCT